Job Description P77748 Confidence 98.20% Date Thu Jan 5 12:32:29 GMT 2012 Rank 44 Aligned Residues 190 % Identity 17% Template c1gx7A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase Resolution UNK

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		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	C	N	G	N	G	L	C	F	N	F	D	A	R	S	P	M	C	P	S	M	K	I	T	Q	N	R	I	H	S	P	K	G	R	A	T	L	V	R	E	W	L	R	L	L	A	D	R	G	V	D	P	L	K	L	E	Q	E	L	P	E	S	G	V	S	L	R	T	L	I	A	R	T	R	N	S	W	H	A
Query Conservation
Alig confidence														.	.	.	.	.	.								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	C	I	G	C	D	T	C	S	Q	Y	.	.	.	.	.	.	C	P	T	A	A	I	F	.	G	E	M	G	E	P	H	S	I	P	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S			S			S	G	G	G	G	.	.	.	.	.	.		T	T	S			B	.			T	T	S			B				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.							.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.							.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		N	K	G	E	Y	D	F	S	H	E	V	K	E	A	M	S	G	C	L	A	C	K	A	C	S	T	Q	C	P	I	K	I	.	.	.	.	.	.	D	V	P	E	F	R	S	R	F	L	Q	L	Y	H	T	R	Y	L	R	P	L	R	D	H	L	V	A	T	V	E	S	Y	A	P	L	M	A	R	A	P	K	T
Query Conservation																																		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	C	I	N	C	G	Q	C	L	T	H	C	P	E	N	A	I	Y	E	A	Q	S	W	V	P	E	V	E	K	K	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S		S			S	S	S	T	T	S	T	T						S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		F	N	F	F	I	N	Q	P	L	V	R	K	L	S	E	K	H	I	G	M	V	D	L	P	L	L	S	V	P	S	L	Q	Q	Q	M	V	G	H	R	S	A	N	M	T	L	E	Q	L	E	S	L	N	A	E	Q	K	A	R	T	V	L	V	V	Q	D	P	F	T	S	Y	Y	D	A	Q	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	K	V	K	C	I	A	M	P	A	P	A	V	R	Y	A	L	G	D	A	F	G	M	P	V	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S															G	G	G	G	T			S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																							97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
				804	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.		.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880
Predicted Secondary structure		.	.																																																													.
Query SS confidence		.	.																																																													.
Query Sequence		.	.	V	V	A	D	F	V	R	L	V	E	K	L	G	F	Q	P	V	L	L	P	F	S	P	N	G	K	A	Q	H	I	K	G	F	L	N	R	F	A	K	T	A	K	K	T	A	D	F	L	N	R	M	A	K	L	G	M	P	M	V	G	.	V	D	P	A	L	V	L	C	Y	R	D	E	Y	K	L	A	L
Query Conservation		.	.																																																													.
Alig confidence		.	.																			.	.	.	.	.	.	.	.	.																																		.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		S	V	T	T	G	K	M	L	A	A	L	Q	K	L	G	F	A	H	C	W	.	.	.	.	.	.	.	.	.	D	T	E	F	T	A	D	V	T	I	W	E	E	G	S	E	F	V	E	R	L	T	K	K	S	D	M	P	L	P	Q	F	T	S	C	C	P	G	W	Q	K	Y	A	E	T	Y	Y	P	E	L	L
Template Known Secondary structure		S		T											T	T				B		.	.	.	.	.	.	.	.	.																						T	T	S	S				S	S																		G	G	G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.										.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		881	.	.		.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		G	E	E	.	R	G	E	F	N	V	L	L	A	N	E	W	L	A	S	A	L	E	S	Q	P	V	A	T	V	S	G	E	S	W	Y	F	F	G	H	C	T	E	V	T
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		P	H	F	S	T	C	K	S	P	I	G	M	N	G	A	L	A	K	T	Y	G	A	E	R	M	K	Y	D	P	K	Q	V	Y	T	V	S	I	M	P	C	I	A	K	K
Template Known Secondary structure		G	G	S		S													T	T						T	T			G	G	G								S		T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions