Job Description P77748 Confidence 97.34% Date Thu Jan 5 12:32:29 GMT 2012 Rank 57 Aligned Residues 202 % Identity 14% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	C	N	G	N	G	L	C	F	N	F	D	A	R	S	P	M	C	P	S	M	K	I	T	Q	N	R	I	H	S	P	K	G	R	A	T	L	V	R	E	W	L	R	L	L	A	D	R	G	V	D	P	L	K	L	E	Q	E	L	P	E	S	G	V	S	L	R	T	L	I	A	R	T	R	N	S	W	H	A	N
Query Conservation
Alig confidence												.	.	.	.	.	.	.			.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.			.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	C	F	H	C	E	K	L	E	N	.	.	.	.	.	.	.	N	F	.	.	.	.	.	D	D	I	K	H	T	T	L	G	E	R	G	A	L	R	E	A	M	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T								T	T	.	.	.	.	.	.	.			.	.	.	.	.					T	T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.			.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.								.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.			.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		K	G	E	Y	D	F	S	H	E	V	K	E	A	M	S	G	C	L	A	C	K	A	.	.	C	S	T	Q	C	P	I	K	I	D	V	P	E	F	R	S	R	F	L	Q	L	Y	H	T	R	Y	L	R	P	L	R	D	H	L	V	A	T	V	E	S	Y	A	P	L	M	A	R	A	P	K	T	F	N	F	F	I
Query Conservation																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.																										.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	L	K	C	A	D	A	P	C	Q	K	S	C	P	T	H	L	D	I	K	S	F	I	T	S	I	S	N	K	N	Y	Y	G	.	.	.	.	.	A	A	K	M	I	F	S	D	N	P	L	G	L	T	C	G	M	V	C	P	T	S	D	L	C	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T						T	S	T	T													T	T					.	.	.	.	.										T	T										G	G	G	S	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template SS confidence
																		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	P	L	V	R	K	L	S	E	K	H	I	G	M	V	D	L	P	L	L	S	V	P	S	L	Q	Q	Q	M	V	G	H	R	S	A	N	M	T	L	E	Q	L	E	S	L	N	A	E	Q	K	A	R	T	V	L	V	V	Q	D	P	F	T	S	Y	Y	D	A	Q	V	V	A	D	F	V	R	L	V	E	K
Query Conservation
Alig confidence																														.	.																																		.	.	.	.	.	.	.
Template Conservation																														.	.																																		.	.	.	.	.	.	.
Template Sequence		G	G	C	N	L	Y	A	T	E	E	G	S	I	N	I	G	G	L	Q	Q	F	A	S	E	V	F	K	A	.	.	M	N	I	P	Q	I	R	N	P	C	L	P	S	Q	E	K	M	P	E	A	Y	S	A	K	I	A	L	L	G	A	G	P	A	.	.	.	.	.	.	.	S	I	S	C	A	S	F	L	A	R
Template Known Secondary structure		G	G		G	G	G	G	S	T	T																			.	.		T				B			T	T	S			G	G	G	S		G	G	G	G									S			.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.																																		.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.								.	200	.	.	.	.	.	.	.	.
		815	.	.	.		.	820	.	.	.			.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.
Predicted Secondary structure						.						.	.
Query SS confidence						.						.	.
Query Sequence		L	G	F	Q	.	P	V	L	L	P	.	.	F	S	P	N	G	K	A	Q	H	I	K	G	F	L	N	R	F	A	K	T	A	K	K	T	A	D	F	L	N	R	M	A	K	L
Query Conservation						.						.	.
Alig confidence						.						.	.
Template Conservation
Template Sequence		L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S	T	S	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K
Template Known Secondary structure			T									S	S	S	S		S	T					T	S		T	T	T	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions