Job Description P77748 Confidence 98.06% Date Thu Jan 5 12:32:29 GMT 2012 Rank 45 Aligned Residues 227 % Identity 18% Template c1c4cA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum Resolution 2.40 Å

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		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	K	V	D	A	V	K	R	G	T	F	D	R	Q	I	P	I	A	V	R	Q	Q	W	R	G	A	M	E	C	N	G	N	G	L	C	F	N	F	D	A	R	S	P	M	C	P	S	M	K	I	T	Q	N	R	I	H	S	P	K	G	R	A	T	L	V	R	E	W	L	R	L	L	A	D	R	G	V	D	P
Query Conservation
Alig confidence																																									.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	A	S	K	P	F	L	P	K	D	K	T	E	Y	V	D	E	R	S	K	S	L	T	V	D	R	T	K	C	L	L	C	G	R	C	V	N	A	.	.	.	.	.	.	C	G	K	N	T	E	T	Y	A	M	K	F	L	N	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	S					S			G	G	G					S	S	S					T	T	S											.	.	.	.	.	.					T	S				S						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.						.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		L	K	L	E	Q	E	L	P	E	S	G	V	S	L	R	T	L	I	A	R	T	R	N	S	W	H	A	N	K	G	E	Y	D	F	S	H	E	V	K	E	A	M	S	G	C	L	A	C	K	A	C	S	T	Q	C	P	I	K	I	.	.	.	.	.	D	V	P	E	F	R	S	R	F	L	Q	L	Y	H	T	R
Query Conservation																																																													.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.											.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	T	I	I	G	A	E	D	E	K	C	F	D	D	T	N	C	L	L	C	G	Q	C	I	I	A	C	P	V	A	A	L	S	E	K	S	H	M	D	R	V	K	N	A	L	N	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						S	G	G	G			G	G	G	S	S												S	S	S	S																.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Template SS confidence
																													173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	R	P	L	R	D	H	L	V	A	T	V	E	S	Y	A	P	L	M	A	R	A	P	K	T	F	N	F	F	I	N	Q	P	L	V	R	K	L	S	E	K	H	I	G	M	V	D	L	P	L	L	S	V	P	S	L	Q	Q	Q	M	V	G	H	R	S	A	N	M	T	L	E	Q	L	E	S	L	N	A	E
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.										.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.
Query Sequence		Q	K	A	R	T	V	L	V	V	Q	D	P	F	T	S	Y	Y	D	A	Q	V	.	.	.	.	.	.	.	.	.	V	A	D	F	V	R	L	V	E	K	L	G	F	Q	P	V	L	L	P	F	S	P	N	G	K	A	Q	H	I	K	G	F	L	N	R	F	A	K	T	A	K	K	T	A	D	F	L	N	R	M
Query Conservation																							.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	E	K	H	V	I	V	A	M	A	P	S	V	R	A	S	I	G	E	L	F	N	M	G	F	G	V	D	V	T	G	K	I	Y	T	A	L	R	Q	L	G	F	D	K	I	F	.	.	.	.	.	.	.	.	.	D	I	N	F	G	A	D	M	T	I	M	E	E	A	T	E	L	V	Q	R	I	E	N	N
Template Known Secondary structure			T	T									T	T	G	G	G	T	G	G	G	G	G	T			S	S														T	T		S				.	.	.	.	.	.	.	.	.																						T	T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.										.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		855	.	.	.	.	860	.	.	.	.	.		.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.		.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.
Predicted Secondary structure													.																			.
Query SS confidence													.																			.
Query Sequence		A	K	L	G	M	P	M	V	G	V	D	.	P	A	L	V	L	C	Y	R	D	E	Y	K	L	A	L	G	E	E	.	R	G	E	F	N	V	L	L	A	N	E	W	L	A	S	A	L	E	S	Q	P	V	A	T	V	S	G	E	S	W	Y	F	F	G	H	C	T	E	V	T	A
Query Conservation													.																			.
Alig confidence					.	.							.																			.
Template Conservation					.	.
Template Sequence		G	P	F	.	.	P	M	F	T	S	C	C	P	G	W	V	R	Q	A	E	N	Y	Y	P	E	L	L	N	N	L	S	S	A	K	S	P	Q	Q	I	F	G	T	A	S	K	T	Y	Y	P	S	I	S	G	L	D	P	K	N	V	F	T	V	T	V	M	P	C	T	S	K	K	F
Template Known Secondary structure			S	S	.	.																	T		G	G	G	T	T	T	B		S	B												T	T						S	S			G	G	G								S		S
Template Predicted Secondary structure					.	.
Template SS confidence
		291	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions