Job Description P77748 Confidence 100.00% Date Thu Jan 5 12:32:29 GMT 2012 Rank 2 Aligned Residues 503 % Identity 17% Template c1ahuB_ PDB info PDB header:flavoenzyme Chain: B: PDB Molecule:vanillyl-alcohol oxidase; PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.														.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	I	S	Q	A	P	G	V	V	Q	L	V	L	N	F	L	Q	E	L	E	Q	Q	G	F	T	G	D	T	A	T	S	Y	A	D	R	L	T	M	S	T	D	N	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	L	L	P	D	A	V	V	F	P	R	S	T	A	D	V	A	L	I	A	R
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	T	L	P	P	K	L	S	L	S	D	F	N	E	F	I	Q	D	I	I	R	I	V	G	S	E	N	V	E	V	I	S	S	K	D	Q	I	V	D	G	S	Y	M	K	P	T	H	T	H	D	P	H	H	V	M	D	Q	D	Y	F	L	A	S	A	I	V	A	P	R	N	V	A	D	V	Q	S	I	V	G
Template Known Secondary structure			S				T	T																			G	G	G						S	G	G	G						S	S	S			S	S	S		S	S		S	S		G	G	G	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		L	A	A	Q	E	R	Y	S	S	L	I	F	T	P	R	G	G	G	T	G	T	.	.	.	.	N	G	Q	A	L	N	Q	G	I	I	V	D	M	S	R	H	M	N	R	I	I	E	I	N	P	E	E	G	W	V	R	V	E	A	G	V	I	K	D	Q	L	N	Q	Y	L	K	P	F	G	Y	F	F	A	P	E
Query Conservation																							.	.	.	.
Alig confidence							.	.	.														.	.	.	.
Template Conservation							.	.	.
Template Sequence		L	A	N	K	F	.	.	.	S	F	P	L	W	P	I	S	I	G	R	N	S	G	Y	G	G	A	A	P	R	V	S	G	S	V	V	L	D	M	G	K	N	M	N	R	V	L	E	V	N	V	E	G	A	Y	C	V	V	E	P	G	V	T	Y	H	D	L	H	N	Y	L	E	A	N	N	L	R	D	K	L	W
Template Known Secondary structure							.	.	.	T							S	S	S			T	T	T	T	T	T			S	S	T	T							T	T	T									T	T	T	T						T	T		B										T	T	T	G	G	G	T
Template Predicted Secondary structure							.	.	.
Template SS confidence
		89	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	T	S	N	R	A	T	L	G	G	M	I	N	T	D	A	S	G	Q	G	S	L	V	Y	G	K	T	S	D	H	V	L	G	V	R	A	V	L	L	G	G	D	I	L	D	T	Q	P	L	P	V	E	L	A	E	T	L	G	K	S	N	T	T	I	G	R	I	Y	N	T	V	Y	Q	R	C	R	Q	Q	R
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	V	P	D	L	G	G	G	S	V	L	G	N	A	V	E	R	G	V	G	Y	T	P	Y	G	D	H	W	M	M	H	S	G	M	E	V	V	L	A	N	G	E	L	L	R	T	G	M	G	A	L	P	D	P	K	R	P	E	T	M	G	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S		S	S	S	B								T		B		S	S	T	T		B	T	G	G	G									T	T	S						G	G	G	G	S						T	T	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	I	I	D	N	F	P	K	L	N	R	F	L	T	G	Y	D	L	R	H	V	F	N	D	E	M	T	E	F	D	L	T	R	I	L	T	G	S	E	G	T	L	A	F	I	T	E	A	R	L	D	I	T	R	L	P	K	V	R	R	L	V	N	V	K	Y	D	S	F	D	S	A	L	R	N	A	P	F	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																		.									.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																		.									.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	P	E	D	Q	P	W	S	K	I	A	H	L	F	P	Y	G	F	.	G	P	Y	I	D	G	L	F	.	.	S	Q	S	N	M	G	I	V	T	K	I	G	I	W	L	M	P	N	P	R	G	Y	Q	S	Y	L	I	T	L	P	K	D	G	D	L	K	Q	A	V	D	I	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	T	T	T					S	G	G	G	T		S			S	.	S				G	G	G	G	.	.	S	S	S	S	S															S											S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																		.									.	.
Template SS confidence
												230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
							306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure		.	.	.	.	.																																			.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																			.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	V	E	A	R	A	L	S	V	E	T	V	D	S	K	V	L	N	L	A	R	E	D	I	V	W	H	S	V	S	E	L	I	T	D	.	.	.	.	.	.	.	V	P	D	Q	E	M	L	G	L	N	I	V	E	F	A	G	D	D	E	A	L	I	D	E	R	V	N	A	L	C	A	R	L	D
Query Conservation		.	.	.	.	.																																			.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	P	L	R	L	G	M	A	L	Q	N	V	P	T	I	R	H	I	L	L	D	A	A	V	L	G	D	K	R	S	Y	S	S	R	T	E	P	L	S	D	E	E	L	D	K	I	A	K	Q	L	N	L	G	R	W	N	F	Y	G	A	L	Y	G	P	E	P	I	R	R	V	L	W	E	T	I	K	D	A	F	S
Template Known Secondary structure								T		S		S															S		S	T	T	T				S	S															T			S									S																G	G
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.								.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.
Query Sequence		E	L	I	A	S	H	Q	A	G	V	I	G	W	Q	V	C	R	E	L	A	G	V	E	R	I	Y	A	M	R	K	K	A	V	G	L	.	.	.	.	.	.	.	L	G	N	A	K	G	A	A	K	P	I	P	F	A	E	D	T	C	V	P	P	E	H	L	A	D	Y	I	A	E	F	R	A	L	L	D	S	H
Query Conservation																																					.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.
Template Sequence		A	.	.	.	.	.	.	I	P	G	V	K	F	Y	F	P	E	D	T	P	E	N	S	V	L	R	V	R	D	K	T	M	Q	G	I	P	T	Y	D	E	L	K	W	I	D	W	L	P	N	G	A	H	L	F	F	S	P	I	A	K	V	S	G	E	D	A	M	M	Q	Y	A	V	T	K	K	R	C	Q	E	A
Template Known Secondary structure		G	.	.	.	.	.	.	S	T	T						G	G	G	S		S	S										T	T	T					G	G	G	G	G	G	G	S	S	S	S								B				S																			T
Template Predicted Secondary structure			.	.	.	.	.	.
Template SS confidence
		377							.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.			.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure																		.	.																																											.
Query SS confidence																		.	.																																											.
Query Sequence		G	L	S	Y	G	M	F	G	H	V	D	A	G	V	L	H	.	.	V	R	P	A	L	D	M	C	D	P	Q	Q	E	I	L	M	K	Q	I	S	D	D	V	V	A	L	T	A	K	Y	G	G	L	L	W	G	E	H	G	K	G	F	.	R	A	E	Y	S	P	A	F	F	G	E	E	L	F	A	E	L	R	K
Query Conservation																		.	.																																											.
Alig confidence																		.	.																																											.
Template Conservation
Template Sequence		G	L	D	F	I	G	T	F	T	V	G	M	R	E	M	H	H	I	V	C	I	V	F	N	K	K	D	L	I	Q	K	R	K	V	Q	W	L	M	R	T	L	I	D	D	C	A	A	N	G	W	G	E	Y	R	T	H	L	A	F	M	D	Q	I	M	E	T	Y	N	W	N	N	S	S	F	L	R	F	N	E	V
Template Known Secondary structure		T											S	S	S											T	T																						T	T			B	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.			.	540	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		V	K	A	A	F	D	P	H	N	R	L	N	P	G	K	.	.	I	C	P	P	E
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		L	K	N	A	V	D	P	N	G	I	I	A	P	G	K	S	G	V	W	P	S	Q
Template Known Secondary structure								T	T			B		T	T	G	G	G				T	T
Template Predicted Secondary structure
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.