 |
| Job Description | P37338 | | Confidence | 36.49% | Date | Thu Jan 5 11:55:19 GMT 2012 |
| Rank | 404 | Aligned Residues | 30 |
| % Identity | 27% | Template | c1u5tB_ |
| PDB info |
PDB header:transport protein | Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; |
PDBTitle: structure of the escrt-ii endosomal trafficking complex
|
| Resolution | 3.60 Å |
|
| | |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
 | | | | | | | |
|
|
| | | | | | | | | | | | | |
|
| | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
M | S | L | L | T | S | R | Y | A | L | G | V | G | P | L | R | E | A | L | S | Q | L | V | A | E | R | L | V | T | V |
| Query Conservation | |
| |
|
|
| | | |
|
|
|
| |
|
|
|
|
|
| | |
| | | |
|
|
| | |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| | |
| | | | | |
|
| | | |
| |
| |
| | | |
| | |
| |
| |
|
| Template Sequence | |
L | S | S | N | N | S | K | S | N | W | T | L | G | I | L | M | E | V | L | Q | N | C | V | D | E | G | D | L | L | I |
| Template Known Secondary structure | |
| | T | S |
| T | T |
|
|
|
| | | | | | | | | | | | | | | T | S |  | |  |
| Template Predicted Secondary structure | |
| | | | | | | |
|
|
| | | | | | | | | | | | | |
|
|
| | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
518 | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
