Job Description P0AGF6 Confidence 100.00% Date Thu Jan 5 11:28:58 GMT 2012 Rank 24 Aligned Residues 299 % Identity 18% Template d1wkva1 SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Resolution 2.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																																																						.																							.
Query SS confidence																																																						.																							.
Query Sequence		H	I	T	Y	D	L	P	V	A	I	D	D	I	I	E	A	K	Q	R	L	A	G	R	I	Y	K	T	G	M	P	R	S	N	Y	F	S	E	R	C	K	G	E	I	F	L	K	F	E	N	M	Q	R	.	T	G	S	F	K	I	R	G	A	F	N	K	L	S	S	L	T	D	A	E	K	R	.	K	G	V	V
Query Conservation																																																						.																							.
Alig confidence																					.	.	.	.																.														.																							.
Template Conservation																					.	.	.	.																.
Template Sequence		D	I	S	V	P	G	E	M	V	F	P	S	P	L	D	F	F	E	R	.	.	.	.	G	K	P	T	P	L	V	R	S	R	L	Q	L	P	N	.	G	V	R	V	W	L	K	L	E	W	Y	N	P	F	S	L	S	V	K	D	R	P	A	V	E	I	I	S	R	L	S	R	R	V	E	K	G	S	L	V	A
Template Known Secondary structure					S		T	T				S	S								.	.	.	.	S		S											S	T	.	T								G	G	G	S	T	T	T	S	B	T	T												T	T	T	S		T	T
Template Predicted Secondary structure																					.	.	.	.																.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		A	C	S	A	G	N	H	A	Q	G	V	S	L	S	C	A	M	L	G	I	D	G	K	V	V	M	P	K	G	A	P	K	S	K	V	A	A	T	C	D	Y	S	A	E	V	V	L	H	G	.	.	D	N	F	N	D	T	I	A	K	V	S	E	I	V	E	M	E	G	R	I	F	I	P	P	Y	D	D	P	K
Query Conservation																																																			.	.
Alig confidence																																																			.	.
Template Conservation
Template Sequence		D	A	T	S	S	N	F	G	V	A	L	S	A	V	A	R	L	Y	G	Y	R	A	R	V	Y	L	P	G	A	A	E	E	F	G	K	L	L	P	R	L	L	G	A	Q	V	I	V	D	P	E	A	P	S	T	V	H	L	L	P	R	V	M	K	D	S	K	N	E	G	F	V	H	V	N	Q	F	Y	N	D	A
Template Known Secondary structure																			T	T									T	T	S											T	T							T	T		S	S	S	G	G	G																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		158	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure					.															.	.	.	.
Query SS confidence					.															.	.	.	.
Query Sequence		V	I	A	.	G	Q	G	T	I	G	L	E	I	M	E	D	L	Y	.	.	.	.	D	V	D	N	V	I	V	P	I	G	G	G	G	L	I	A	G	I	A	V	A	I	K	S	I	N	P	T	I	R	V	I	G	V	Q	S	E	N	V	H	G	M	A	A	S	F	H	S	G	E	I	T	T	H	R	T	T	G
Query Conservation					.															.	.	.	.
Alig confidence					.															.	.	.	.																																																						.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		N	F	E	A	H	M	R	G	T	A	R	E	I	F	V	Q	S	R	R	G	G	L	A	L	R	G	V	A	G	S	L	G	T	S	G	H	M	S	A	A	A	F	Y	L	Q	S	V	D	P	S	I	R	A	V	L	V	Q	P	A	Q	G	D	S	I	P	G	I	R	R	V	E	T	G	M	L	.	.	.	.	.
Template Known Secondary structure									T												T	T											S	S	S															T	T										T	T				T	T				G	G	G			S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	A	D	G	C	D	V	S	R	P	G	N	L	T	Y	E	I	V	R	E	L	V	D	D	I	V	L	V	S	E	D	E	I	R	N	S	M	I	A	L	I	Q	R	N	K	V	V	T	E	G	A	G	A	L	A	C	A	A	L	L	S	G	K	L	D	Q	Y	I	Q	N	R	K	T	V	S	I	I	S	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	I	N	M	L	D	I	S	Y	T	L	A	E	V	T	L	E	E	A	M	E	A	V	V	E	V	A	R	S	D	G	L	V	I	G	P	S	G	G	A	A	V	K	A	L	A	K	K	A	A	E	G	D	L	E	P	G	D	Y	V	V	V	V	P	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S																										S			B																	T	T		S		S									B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
			313	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	N	I	D	L	S	R	V	S	Q	I	T	G
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		T	G	F	K	Y	L	S	L	V	Q	N	A	L	E
Template Known Secondary structure		B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions