Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGF6
Confidence100.00%DateThu Jan 5 11:28:58 GMT 2012
Rank35Aligned Residues305
% Identity15%Templated1j0aa_
SCOP infoTryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50... ......60.........70.........80... ...
Predicted Secondary structure 













..










.
Query SS confidence 











































. .





























.


Query Sequence  AIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQR. . TGSFKIRGAFNKLSSLTDAEKRKGVVACSA. GNH
Query Conservation      
  
   
      


     
    
  
  
 
  

..


 
 
 
   
           

  

.

 
Alig confidence 











































..





























.


Template Conservation       
    

      


     
    
  
  




     

 
 
     
  
   
   

    
 

 
Template Sequence  KIFALLAKFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNH
Template Known Secondary structure  TT







S



TSGGGS
STT
STTT
S

TT
Template Predicted Secondary structure 



































Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   87..90.........100.........110....... ..120.........130 .........140.........150.. ......
Predicted Secondary structure 







.





.....





..


Query SS confidence 






























.












. . . . .





















. .





Query Sequence  AQGVSLSCAMLGIDGKVVMPKGAPKSKVAAT. CDYSAEVVLHGDN. . . . . FNDTIAKVSEIVEMEGRIFIPP. . YDDPKV
Query Conservation 
 


  
   
    

 
          
.   

 
      .....       
   
          ..      
Alig confidence 






























.












.....





















..





Template Conservation 
 


  
   

   



          
 
  

 
  
               
             
        
Template Sequence  AFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIG
Template Known Secondary structure  TT
S


S
TT
S

STTTTTSS


GGG
S
Template Predicted Secondary structure 

























Template SS confidence 















































































   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   159160.........170.... .....180.........190.........200.........210.........220.........230.......
Predicted Secondary structure 

.





























Query SS confidence 















.






























































Query Sequence  IAGQGTIGLEIMEDLY. DVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADG
Query Conservation    
  
   

  
  .  
 

   



   
     
      


 

             
         
   
Alig confidence 















.




















































.........
Template Conservation    
    
 

  
    

 


  



   

            



                   ......... 
Template Sequence  TLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKE. . . . . . . . . A
Template Known Secondary structure  T




SSSSTT



SS
SSS.........
Template Predicted Secondary structure 

















.........
Template SS confidence 















































































   164.....170.........180.........190.........200.........210.........220.........230... .
 
   238.240.........250.........260.........270.........280.... .....290.........300.........310......
Predicted Secondary structure 
















.













Query SS confidence 














































.































Query Sequence  CDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGA. GALACAALLSGKLDQYIQNRKTVSIISGGNID
Query Conservation 
                      
 
 
   
   
    

   

.

 




             

 




  
Alig confidence 














































.
















.













Template Conservation                         
 
 
   
   
    

  

  

 
  

         .   

 
 


  
Template Sequence  AELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGEL. GEKILFIHTGGISG
Template Known Secondary structure  TT



S


STTSTT


S



TTTTT
S.
S


Template Predicted Secondary structure 
























.





Template SS confidence 















































































   235....240.........250.........260.........270.........280.........290......... 300.........310...
 
   317..320....
Predicted Secondary structure 
Query SS confidence 







Query Sequence  LSRVSQIT
Query Conservation          
Alig confidence 







Template Conservation          
Template Sequence  TFHYGDKL
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 







   314.....320.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions