Phyre 2 alignment of P0AGF6 with d1fcja

Job Description P0AGF6
Confidence 100.00% Date Thu Jan 5 11:28:58 GMT 2012

Rank 31 Aligned Residues 289

% Identity 22% Template d1fcja_

SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes

Resolution 2.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence	E	A	K	Q	R	L	A	G	R	I	Y	K	T	G	M	P	R	S	N	Y	F	S	E	R	C	K	G	E	I	F	L	K	F	E	N	M	Q	R	T	G	S	F	K	I	R	G	A	F	N	K	L	S	S	L	T	D	A	E	K	R	K	.	.	.	G	V	V	A	C	S	A	G	N	H	A	Q	G	V	S	L
Query Conservation																																																														.	.	.
Alig confidence																							.	.	.																																					.	.	.
Template Conservation																							.	.	.
Template Sequence	K	I	Y	E	D	N	S	L	T	I	G	H	T	P	L	V	R	L	N	R	I	G	.	.	.	N	G	R	I	L	A	K	V	E	S	R	N	P	S	F	S	V	K	C	R	I	G	A	N	M	I	W	D	A	E	K	R	G	V	L	K	P	G	V	E	L	V	E	P	T	N	G	N	T	G	I	A	L	A	Y
Template Known Secondary structure				S	S	G	G	G	G										S	S	S	S	.	.	.	S	S							T	T	S	S	G	G	G	B	T																T				T	T								S	S
Template Predicted Secondary structure																							.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.

	93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.																		.	.														.
Query SS confidence																																					.	.																		.	.														.
Query Sequence	S	C	A	M	L	G	I	D	G	K	V	V	M	P	K	G	A	P	K	S	K	V	A	A	T	C	D	Y	S	A	E	V	V	L	H	G	.	.	D	N	F	N	D	T	I	A	K	V	S	E	I	V	E	M	E	.	.	G	R	I	F	I	P	P	Y	D	D	P	K	V	.	I	A	G	Q	G	T	I	G	L
Query Conservation																																					.	.																		.	.														.
Alig confidence																																					.	.																		.	.														.
Template Conservation
Template Sequence	V	A	A	A	R	G	Y	K	L	T	L	T	M	P	E	T	M	S	I	E	R	R	K	L	L	K	A	L	G	A	N	L	V	L	T	E	G	A	K	G	M	K	G	A	I	Q	K	A	E	E	I	V	A	S	D	P	Q	K	Y	L	L	L	Q	Q	F	S	N	P	A	N	P	E	I	H	E	K	T	T	G	P
Template Known Secondary structure						T									T	T	S											T	T								G	G	G															T	S	T	T	T						T	T	T		T									T
Template Predicted Secondary structure
Template SS confidence
	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

	168	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure									.																												.	.
Query SS confidence									.																												.	.
Query Sequence	E	I	M	E	D	L	Y	D	.	V	D	N	V	I	V	P	I	G	G	G	G	L	I	A	G	I	A	V	A	I	K	S	I	N	P	T	.	.	I	R	V	I	G	V	Q	S	E	N	V	H	G	M	A	A	S	F	H	S	G	E	I	T	T	H	R	T	T	G	T	L	A	D	G	C	D	V	S	R	P	G
Query Conservation									.																												.	.
Alig confidence									.																												.	.																										.	.	.
Template Conservation																																																																.	.	.
Template Sequence	E	I	W	E	D	T	D	G	Q	V	D	V	F	I	S	G	V	G	T	G	G	T	L	T	G	V	T	R	Y	I	K	G	T	K	G	K	T	D	L	I	T	V	A	V	E	P	T	D	S	P	V	I	A	Q	A	L	A	G	E	E	I	K	P	.	.	.	G	P	H	K	I	Q	G	I	G	A	G	F	I	P
Template Known Secondary structure						T	T	T										S	S	S												T	T	T			T	T									T	T	S								T	T						.	.	.				S		T	T	S			S	S
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.

	245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	L	T	Y	E	I	V	R	E	L	V	D	D	I	V	L	V	S	E	D	E	I	R	N	S	M	I	A	L	I	Q	R	N	K	V	V	T	E	G	A	G	A	L	A	C	A	A	L	L	S	G	K	L	D	Q	Y	I	Q	N	R	K	T	V	S	I	I	S	G	G
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence	G	N	.	.	.	L	D	L	K	L	I	D	K	V	V	G	I	T	N	E	E	A	I	S	T	A	R	R	L	M	E	E	E	G	I	L	A	G	I	S	S	G	A	A	V	A	A	A	L	K	L	Q	E	D	E	S	F	T	N	K	N	I	V	V	I	L	P	S	S
Template Known Secondary structure	T	T	.	.	.			G	G	G		S																																								T	T	S	G	G	G	T	T									B
Template Predicted Secondary structure			.	.	.
Template SS confidence
	236	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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