Job Description P0AGF6 Confidence 100.00% Date Thu Jan 5 11:28:58 GMT 2012 Rank 12 Aligned Residues 318 % Identity 19% Template c3r0zA_ PDB info PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.														.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.									.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.												.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.												.
Query Sequence		T	Y	D	L	P	V	A	I	D	D	I	I	E	A	K	Q	R	L	A	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	K	T	G	M	P	R	S	N	Y	F	S	E	R	C	K	G	.	.	.	.	.	.	.	.	E	I	F	L	K	F	E	N	M	Q	R	.	T	G	S	F	K	I	R	G
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.												.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.												.
Template Conservation
Template Sequence		L	P	Y	V	G	L	T	E	Q	D	V	N	A	A	H	D	R	L	A	R	F	A	P	Y	L	A	K	A	F	P	Q	T	G	G	M	I	E	S	D	V	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	G	Q	T	I	N	G	E	M	L	L	K	K	D	S	H	L	A	I	S	G	S	I	K	A	R	G
Template Known Secondary structure		G	G	G	T																									S	T	T																													S							G	G	G		T	T	T	S	B	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.																										.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	N	K	L	S	S	L	T	D	A	E	K	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	V	A	C	S	A	G	N	H	A	Q	G	V	S	L	S	C	A	M	L	G	I	D	G	K	V	V	M	P	K	G	A	P	K	S	K	V	A	A
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	Y	E	V	L	T	H	A	E	K	L	A	L	E	A	G	L	L	T	T	D	D	D	Y	S	V	L	L	S	P	E	F	K	Q	F	F	S	Q	Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	C	I	G	F	K	V	T	V	H	M	S	A	D	A	R	A	W	K	K	A	K
Template Known Secondary structure																		T	S			T	T	S		G	G	G	G	G	S								T	T	S							S	S														T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.										.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.
Query Sequence		T	C	D	Y	S	A	E	V	V	L	H	G	D	N	F	N	D	T	I	A	K	V	S	E	I	V	E	M	E	G	R	I	F	I	P	P	Y	D	D	P	K	V	I	A	G	Q	G	T	I	G	L	E	I	M	E	D	L	.	.	.	.	.	.	.	.	.	Y	D	V	D	N	V	I	V	P	I	G	G	G	G
Query Conservation																																																											.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.
Template Sequence		L	R	S	H	G	V	T	V	V	E	Y	E	D	D	Y	G	V	A	V	E	Q	G	R	K	A	A	Q	S	D	P	N	C	F	.	.	.	F	I	S	R	T	L	F	L	G	Y	A	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	V	V	D	A	S	H	P	L	F	V	Y	L	P	C	G	V	G	G
Template Known Secondary structure					T	T							S	S		T	T												T		T	T			.	.	.												T													T				S	S	S	S									S	S	S
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																	.																															.	.	.	.	.	.
Query SS confidence																	.																															.	.	.	.	.	.
Query Sequence		L	I	A	G	I	A	V	A	I	K	S	I	N	P	T	.	I	R	V	I	G	V	Q	S	E	N	V	H	G	M	A	A	S	F	H	S	G	E	I	T	T	H	R	T	T	G	.	.	.	.	.	.	T	L	A	D	G	C	D	V	S	R	P	G	N	L	T	Y	E	I	V	R	E	L	V	D	D	I	V	L
Query Conservation																	.																															.	.	.	.	.	.
Alig confidence																	.																															.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	G	G	V	A	F	G	L	K	L	A	F	G	D	N	V	H	C	F	F	A	E	P	T	H	S	P	C	M	L	L	G	V	Y	T	G	L	H	D	A	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R	A	M	E	R	L	L	D	G	L	Y	T
Template Known Secondary structure															G	G	G									T	T											S		G	G	G			S	T	T	T	T						S		G	G	G			S	S										G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.												.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		V	S	E	D	E	I	R	N	S	M	I	A	L	I	Q	R	N	K	V	V	T	E	G	A	G	A	L	A	C	A	A	L	L	S	G	K	L	.	.	.	.	.	.	.	.	.	.	.	D	Q	Y	I	Q	N	R	K	T	V	S	I	I	S	G	G	.	N	I	D	L	S	R	V	S	Q	I	T
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		L	D	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E	G	I	R	L	E	P	S	A	L	A	G	M	A	G	P	Q	R	I	C	A	S	V	A	Y	Q	Q	R	H	G	F	S	Q	T	Q	L	G	N	A	T	H	L	V	W	A	T	G	G	G	M	V	P	E	D	E	M	E	Q	Y	L
Template Known Secondary structure																								G	G	G	G	G	G	G	G															T	T								T									B		T	T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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