Phyre 2 alignment of P0AGF6 with c2o2jA

Job Description P0AGF6
Confidence 100.00% Date Thu Jan 5 11:28:58 GMT 2012

Rank 34 Aligned Residues 271

% Identity 24% Template c2o2jA_

PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: mycobacterium tuberculosis tryptophan synthase beta chain2 dimer (apoform)

Resolution 2.56 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																	.																	.
Query SS confidence																	.																	.
Query Sequence	A	I	D	D	I	I	E	A	K	Q	R	L	A	G	R	I	.	Y	K	T	G	M	P	R	S	N	Y	F	S	E	R	C	K	.	G	E	I	F	L	K	F	E	N	M	Q	R	T	G	S	F	K	I	R	G	A	F	N	K	L	S	S	L	T	D	A	E	K	R	K	G	V	V	A	C	S	A	G	N	H	A
Query Conservation																	.																	.
Alig confidence																	.																	.
Template Conservation
Template Sequence	S	Q	D	F	L	D	D	L	D	R	L	Q	A	N	Y	A	G	R	P	S	P	L	Y	E	A	T	R	L	S	Q	H	A	G	S	A	R	I	F	L	K	R	E	D	L	N	H	T	G	S	H	K	I	N	N	V	L	G	Q	A	L	L	A	R	R	M	G	K	T	R	V	I	A	E	T	G	A	G	Q	H	G
Template Known Secondary structure	S												T	T	T	S	S		S							T	T	T	G	G	G	T	T	T								G	G	G			T	T																	T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
	51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130

	88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.						150	.	.	.	.
Predicted Secondary structure																					.	.	.																						.	.	.																	.	.						.	.	.	.	.
Query SS confidence																					.	.	.																						.	.	.																	.	.						.	.	.	.	.
Query Sequence	Q	G	V	S	L	S	C	A	M	L	G	I	D	G	K	V	V	M	P	K	.	.	.	G	A	P	K	S	K	V	A	A	T	C	D	Y	S	A	E	V	V	L	H	G	.	.	.	D	N	F	N	D	T	I	A	K	V	S	E	I	V	E	M	.	.	E	G	R	I	F	.	.	.	.	.	I	P	P	Y	D
Query Conservation																					.	.	.																						.	.	.																	.	.						.	.	.	.	.
Alig confidence																					.	.	.																						.	.	.																	.	.						.	.	.	.	.
Template Conservation
Template Sequence	V	A	T	A	T	A	C	A	L	L	G	L	D	C	V	I	Y	M	G	G	I	D	T	A	R	Q	A	L	N	V	A	R	M	R	L	L	G	A	E	V	V	A	V	Q	T	G	S	K	T	L	K	D	A	I	N	E	A	F	R	D	W	V	A	N	A	D	N	T	Y	Y	C	F	G	T	A	A	G	P	H	P
Template Known Secondary structure											T														S	S	T	T								T	T								S	S	S		S																T	T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

	155	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure							.														.	.	.	.	.
Query SS confidence							.														.	.	.	.	.
Query Sequence	D	P	K	V	I	A	.	G	Q	G	T	I	G	L	E	I	M	E	D	L	.	.	.	.	.	Y	D	V	D	N	V	I	V	P	I	G	G	G	G	L	I	A	G	I	A	V	A	I	K	S	I	N	P	T	I	R	V	I	G	V	Q	S	E	N	V	H	G	M	A	A	S	F	H	S	G	E	I	T	T	H
Query Conservation							.														.	.	.	.	.
Alig confidence							.														.	.	.	.	.																										.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	P	T	M	V	R	D	F	Q	R	I	I	G	M	E	A	R	V	Q	I	Q	G	Q	A	G	R	L	P	D	A	V	V	A	C	V	G	G	G	S	N	A	I	G	I	F	H	A	F	L	D	.	D	P	G	V	R	L	V	G	F	E	A	A	G	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								G	G	G															S	S			S							S	S		T	T	S	G	G	G	S	G	G	G	T	T	.		T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

	229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	T	T	G	T	L	A	D	G	C	D	V	S	R	P	G	N	L	T	Y	E	I	V	R	E	L	V	D	D	I	V	L	V	S	E	D	E	I	R	N	S	M	I	A	L	I	Q	R	N	K	V	V	T	E	G	A	G	A	L	A	C	A	A	L	L	S	G	K	L	D	Q	Y	I	Q	N	R	K	T	V	S
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	R	P	I	T	D	S	E	A	M	D	A	F	G	L	L	C	R	M	E	G	I	I	P	A	I	E	S	A	H	A	V	A	G	A	L	K	L	G	.	V	E	L	G	R	G	A	V	I	V	V
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					S																				.					T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template SS confidence
																													337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.

	309	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence	I	I	S	G	.	G	N	I	D	L	S	R	V	S	Q	I	T
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence	N	L	S	G	R	G	D	K	D	V	E	T	A	A	K	W	F
Template Known Secondary structure				S		S	S	S
Template Predicted Secondary structure
Template SS confidence
	388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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