Job Description P0AGF6 Confidence 100.00% Date Thu Jan 5 11:28:58 GMT 2012 Rank 20 Aligned Residues 323 % Identity 21% Template c1x1qA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.								.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																		.	.	.	.	.	.	.										.																.
Query SS confidence																		.	.	.	.	.	.	.										.																.
Query Sequence		M	H	I	T	Y	D	L	P	V	A	I	D	D	I	I	E	.	.	.	.	.	.	.	A	K	Q	R	L	A	G	R	I	.	Y	K	T	G	M	P	R	S	N	Y	F	S	E	R	C	.	K	G	E	I	F	L	K	F	E	N	M	Q	R	T	G	S	F	K	I	R	G	A	F	N	K	L	S	S	L	T	D
Query Conservation																		.	.	.	.	.	.	.										.																.
Alig confidence																		.	.	.	.	.	.	.										.																.
Template Conservation
Template Sequence		I	P	A	L	E	E	L	E	A	A	Y	R	E	A	K	K	D	P	A	F	L	E	E	L	D	H	Y	L	R	Q	F	A	G	R	P	T	P	L	Y	H	A	K	R	L	S	E	Y	W	G	G	A	Q	V	F	L	K	R	E	D	L	L	H	T	G	A	H	K	I	N	N	T	L	G	Q	A	L	L	A	R	R
Template Known Secondary structure																																T	T			S														T	S	S							G	G	G	S	G	G	G	B	T	T
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																			.	.	.																									.	.	.
Query SS confidence																																			.	.	.																									.	.	.
Query Sequence		A	E	K	R	K	G	V	V	A	C	S	A	G	N	H	A	Q	G	V	S	L	S	C	A	M	L	G	I	D	G	K	V	V	.	.	.	M	P	K	G	A	P	K	S	K	V	A	A	T	C	D	Y	S	A	E	V	V	L	H	G	.	.	.	D	N	F	N	D	T	I	A	K	V	S	E	I	V	E	M	E
Query Conservation																																			.	.	.																									.	.	.
Alig confidence																																			.	.	.																									.	.	.
Template Conservation
Template Sequence		X	G	K	R	R	V	I	A	E	T	G	A	G	Q	H	G	V	S	V	A	T	V	A	A	L	F	G	L	E	C	V	V	Y	X	G	E	E	D	V	R	R	Q	A	L	N	V	F	R	X	K	L	L	G	A	E	V	R	P	V	A	A	G	S	R	T	L	K	D	A	T	N	E	A	I	R	D	W	I	T	N
Template Known Secondary structure			T									S	S	S														T														T											T	T								S	T	T	S	S															T
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		146								.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure			.	.	.	.	.	.	.															.														.	.	.	.	.																											.
Query SS confidence			.	.	.	.	.	.	.															.														.	.	.	.	.																											.
Query Sequence		G	.	.	.	.	.	.	.	R	I	F	I	P	P	Y	D	D	P	K	V	I	A	.	G	Q	G	T	I	G	L	E	I	M	E	D	L	.	.	.	.	.	Y	D	V	D	N	V	I	V	P	I	G	G	G	G	L	I	A	G	I	A	V	A	I	K	S	I	.	N	P	T	I	R	V	I	G	V	Q	S	E
Query Conservation			.	.	.	.	.	.	.															.														.	.	.	.	.																											.
Alig confidence			.	.	.	.	.	.	.															.														.	.	.	.	.																											.
Template Conservation
Template Sequence		V	R	T	T	F	Y	I	L	G	S	V	V	G	P	H	P	Y	P	X	X	V	R	D	F	Q	S	V	I	G	E	E	V	K	R	Q	S	L	E	L	F	G	R	L	P	D	A	L	I	A	A	V	G	G	G	S	N	A	I	G	L	F	A	P	F	A	Y	L	P	E	G	R	P	K	L	I	G	V	E	A	A
Template Known Secondary structure		T	T	T								S	S	S	S	T	T										T															S	S			S							S	S	S	S											T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		212	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		N	V	H	G	M	A	A	.	.	.	.	S	F	H	S	G	E	I	T	T	H	R	T	T	G	T	L	A	D	G	C	D	V	S	R	P	G	N	L	T	Y	E	I	V	R	E	L	V	D	D	I	V	L	V	S	E	D	E	I	R	N	S	M	I	A	L	I	Q	R	N	K	V	V	T	E	G	A	G	A	L
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																		.
Template Conservation																														.
Template Sequence		G	E	G	L	S	T	G	R	H	A	A	S	I	G	A	G	K	R	G	V	L	H	G	S	Y	X	Y	L	.	L	Y	D	Y	P	G	V	G	P	E	H	S	Y	Y	A	D	A	G	V	A	E	Y	A	S	V	T	D	E	E	A	L	E	G	F	K	L	L	A	R	L	E	G	I	I	P	A	L	E	S	A	H
Template Known Secondary structure			T	T	S	S	S										T						T	T					B	.					S	B												T	S																							S			B
Template Predicted Secondary structure																														.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		A	C	A	A	L	L	S	G	K	L	D	Q	Y	I	Q	N	R	K	T	V	S	I	I	S	G	.	G	N	I	D	L	S	R	V	S	Q	I	T	G
Query Conservation																											.
Alig confidence											.																.
Template Conservation											.
Template Sequence		A	I	A	Y	A	A	K	V	V	.	P	E	X	D	K	D	Q	V	V	V	I	N	L	S	G	R	G	D	K	D	V	T	E	V	X	R	L	L	G
Template Known Secondary structure										T	.	T	T	S		T	T									B	B	G	G	G	T							T
Template Predicted Secondary structure											.
Template SS confidence
		378	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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