Job Description P0A796 Confidence 95.98% Date Thu Jan 5 11:05:08 GMT 2012 Rank 17 Aligned Residues 235 % Identity 14% Template d2nzug1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.50

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	K	I	G	V	L	T	S	G	G	D	A	P	G	M	N	A	A	I	R	G	V	V	R	S	A	L	T	E	G	L	E	V	M	G	I	Y	D	G	Y	L	G	L	Y	E	D	R	M	V	Q	L	D	R	Y	S	V	S	D	M	I	N	R	G	G	T	F	L	G	S	A	R	F	P	E	F	R	D	E	N
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	T	V	G	V	I	I	P	D	I	S	N	I	F	Y	A	E	L	A	R	G	I	E	D	I	A	T	M	Y	K	Y	N	I	I	L	S	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	N	Q	D
Template Known Secondary structure			S							S		T	T	S																	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.																																					.	100	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	A	V	A	I	E	N	L	K	K	R	G	I	D	A	L	V	V	I	G	G	D	G	S	Y	M	G	A	M	R	L	T	E	M	G	F	P	C	I	G	L	P	G	T	I	D	N	D	I	K	G	T	D	Y	T	I	G	F	F	T	A	L	S	T	V	V	E	A	I	D	R	L	R	D	T	S	S	S	H
Query Conservation
Alig confidence																																												.																														.	.	.	.	.
Template Conservation																																												.																														.	.	.	.	.
Template Sequence		K	E	L	H	L	L	N	N	M	L	G	K	Q	V	D	G	I	I	F	M	S	G	N	V	T	E	E	H	V	E	E	L	K	K	S	P	V	P	V	V	L	A	.	A	S	I	E	S	T	N	Q	I	P	S	V	T	I	D	Y	E	Q	A	A	F	D	A	V	Q	S	L	I	D	.	.	.	.	.	S	G	H
Template Known Secondary structure												T	T			S							S														S	S						.	S				T	T			S																					.	.	.	.	.	T	T
Template Predicted Secondary structure																																												.																														.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.
		162	.	.	.	.	.									.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.
Query Sequence		Q	R	I	S	V	V	.	.	.	.	.	.	.	.	E	V	M	G	R	Y	C	G	D	L	T	L	A	A	A	I	A	G	G	C	E	F	V	V	V	P	E	V	E	F	S	R	E	D	L	V	N	E	I	K	A	G	I	A	K	G	K	K	H	A	I	V	A	I	T	E	H	M	C	D	V	D	E	L	A	H
Query Conservation								.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	I	A	F	V	S	G	T	L	E	E	P	I	N	H	A	K	K	V	K	G	Y	K	R	A	L	T	E	S	G	L	P	V	R	D	S	Y	I	V	E	G	D	Y	T	Y	D	S	G	I	E	A	V	E	K	L	L	E	E	D	E	K	P	T	A	I	F	V	G	T	D	E	M	A	L	G	V	I	H	G
Template Known Secondary structure		S							S		T	T	S					T	T												T	T					G	G	G						S	S													T	S	S	S			S					S	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250						.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		F	I	E	K	E	T	G	R	E	T	R	A	T	V	L	G	H	.	.	.	.	.	I	Q	R	G	G	S	P	V	P	Y	D	R	I	L	A	S	R	M	G	A	Y	A	I	D	L	L	L	A
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.
Template Conservation
Template Sequence		A	Q	D	R	G	L	N	V	P	N	D	L	E	I	I	G	F	D	N	T	R	L	S	T	M	V	R	P	Q	L	T	S	V	V	Q	P	M	Y	D	I	G	A	V	A	M	R	L	L	T	K
Template Known Secondary structure				T	T	T			T	T	T	T										G	G	G	G	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions