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Job DescriptionP0A796
Confidence86.50%DateThu Jan 5 11:05:08 GMT 2012
Rank70Aligned Residues237
% Identity12%Templatec3ksmA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  KIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIR
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Template Sequence  KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DGDIAGQI
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S
SSSTT



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   40.........50.........60.........70........ .80......
 
   84.....90.........100... ......110.........120.........130.........140.........150.........160.
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Query Sequence  AVAIENLKKRGIDALVVIGG. . DGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSH
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Template Sequence  QILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKER
Template Known Secondary structure  S

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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   162.......170..... ....180.........190..... ....200.........210.........220.........230......
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Query Sequence  QRISVVEVMGRYCG. . . DLTLAAAIAGGCEFVVVPEV. . EFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIE
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Template Sequence  NIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEXLRLLKE. TPTIDGLFTPNESTTIGALVAIR
Template Known Secondary structure 
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   167..170.........180.........190.........200.........210.........220.. .......230.........240.....
 
   237..240.........250.........260..... ....270........
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Query Sequence  KETGRETRATVLGHIQRGGSPVPYDRILA. . . . . . . . . . . SRMGAYAIDLLLA
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Template Sequence  . QSGXSKQFGFIGF. . . DQTEELEAAXYAGEISNLVVQNPEYXGYLAVQRALD
Template Known Secondary structure  .TT
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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