Job Description P0A796 Confidence 72.47% Date Thu Jan 5 11:05:08 GMT 2012 Rank 90 Aligned Residues 177 % Identity 15% Template c3jy6B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis Resolution 1.97 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	G	V	L	T	S	G	G	D	A	P	G	M	N	A	A	I	R	G	V	V	R	S	A	L	T	E	G	L	E	V	M	G	I	Y	D	G	Y	L	G	L	Y	E	D	R	M	V	Q	L	D	R	Y	S	V	S	D	M	I	N	R	G	G	T	F	L	G	S	A	R	F	P	E	F	R	D	E	N	I
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	I	A	V	I	V	A	N	I	D	D	Y	F	S	T	E	L	F	K	G	I	S	S	I	L	E	S	R	G	Y	I	G	V	L	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	A	D	I	E	R
Template Known Secondary structure									S		T	T	S															G	G	G	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																																					.	.	.	.	.	110	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	V	A	I	E	N	L	K	K	R	G	I	D	A	L	V	V	I	G	G	D	G	S	Y	M	G	A	M	R	L	T	E	M	G	F	P	C	I	G	L	P	G	T	I	D	N	D	I	K	G	T	D	Y	T	I	G	F	F	T	A	L	S	T	V	V	E	A	I	D	R	L	R	D	T	S	S	S	H	Q
Query Conservation
Alig confidence																										.																																														.	.	.	.	.	.
Template Conservation																										.																																														.	.	.	.	.	.
Template Sequence		E	K	T	L	L	R	A	I	G	S	R	G	F	D	G	L	I	L	Q	S	F	S	N	P	.	Q	T	V	Q	E	I	L	H	Q	Q	M	P	V	V	S	V	D	R	E	M	D	A	C	P	W	P	Q	V	V	T	D	N	F	E	A	A	K	A	A	T	T	A	F	R	Q	.	.	.	.	.	.	Q	G	Y	Q
Template Known Secondary structure												T	T		S						S	S	S			.								T	T	S	S						S				S	S		S	S																				T	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																										.																																														.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		R	I	S	V	V	E	V	M	G	R	Y	C	G	D	.	.	.	.	L	T	L	A	A	A	I	A	G	G	C	E	F	V	V	V	P	E	V	E	F	S	R	E	D	L	V	N	E	I	K	A	G	I	A	K	G	K	K	H	A	I	V	A	I	T
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.
Template Conservation
Template Sequence		H	V	V	V	L	T	S	E	L	E	L	S	R	T	R	Q	E	R	Y	R	G	I	L	A	A	A	Q	D	V	D	V	L	E	V	S	E	S	S	Y	N	H	S	E	V	H	Q	R	L	T	Q	L	I	T	Q	N	D	Q	K	T	V	A	F	A	L
Template Known Secondary structure										G	G	G													T	T		S									T	T	S																S	S		S							S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions