Job Description P0A796 Confidence 67.64% Date Thu Jan 5 11:05:08 GMT 2012 Rank 99 Aligned Residues 181 % Identity 11% Template c3g1wB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans Resolution 2.02 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	G	V	L	T	S	G	G	D	A	P	G	M	N	A	A	I	R	G	V	V	R	S	A	L	T	E	G	L	E	V	M	G	I	Y	D	G	Y	L	G	L	Y	E	D	R	M	V	Q	L	D	R	Y	S	V	S	D	M	I	N	R	G	G	T	F	L	G	S	A	R	F	P	E	F	R	D	E	N	I
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	Y	X	X	I	T	F	Q	S	G	X	D	Y	W	K	R	C	L	K	G	F	E	D	A	A	Q	A	L	N	V	T	V	E	Y	R	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	Y	D	I	Q	E
Template Known Secondary structure										S	T	T	S	T																	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80																																				.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		R	A	V	A	I	E	N	L	K	K	R	G	I	D	A	L	V	V	I	G	G	D	G	S	.	.	Y	M	G	A	M	R	L	T	E	M	G	F	P	C	I	G	L	P	G	T	I	D	N	D	I	K	G	T	D	Y	T	I	G	F	F	T	A	L	S	T	V	V	E	A	I	D	R	L	R	D	T	S	S	S
Query Conservation																										.	.
Alig confidence																										.	.																		.	.	.	.
Template Conservation																																													.	.	.	.
Template Sequence		Q	I	T	V	L	E	Q	A	I	A	K	N	P	A	G	I	A	I	S	A	I	D	P	V	E	L	T	D	T	I	N	K	A	V	D	A	G	I	P	I	V	L	F	.	.	.	.	D	S	G	A	P	D	S	H	A	H	S	F	L	G	T	N	N	Y	N	A	G	X	N	A	A	Y	K	X	A	E	L	L	D
Template Known Secondary structure															S							S	S	T	T	T	T										T	T							.	.	.	.	S	S			T	T	S			S																						T	T
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		161	.	.	.	.	.	.	.	.	170	.								.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure													.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.
Query Sequence		H	Q	R	I	S	V	V	E	V	M	G	.	.	.	.	.	.	.	R	Y	C	G	D	L	T	L	A	A	A	I	A	G	G	C	E	F	V	V	V	P	E	V	E	F	S	R	E	D	L	V	N	E	I	K	A	G	I	A	K	G	K	K	H	A	I	V	A	I	T
Query Conservation													.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	G	E	V	A	V	I	T	L	P	N	Q	L	N	H	Q	E	R	T	T	G	F	K	E	T	L	E	A	E	F	P	A	I	E	V	I	A	V	E	D	G	R	G	D	S	L	H	S	R	R	V	A	H	Q	L	L	E	D	Y	P	N	L	A	G	I	F	A	T
Template Known Secondary structure		T										T	T																				T	T										T	T																	T	T							S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions