Job Description P0A796 Confidence 87.95% Date Thu Jan 5 11:05:08 GMT 2012 Rank 67 Aligned Residues 195 % Identity 13% Template c3brsA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		D	E	N	I	R	A	V	A	I	E	N	L	K	K	R	G	I	D	A	L	V	V	I	G	G	D	.	.	G	S	Y	M	G	A	M	R	L	T	E	M	G	F	P	C	I	G	L	P	G	T	I	D	N	D	I	K	G	T	D	Y	T	I	G	F	F	T	A	L	S	T	V	V	E	A	I	D	R	L	R	D
Query Conservation																												.	.
Alig confidence																												.	.																																																.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		D	Y	L	V	Q	N	E	L	I	E	E	A	I	K	R	K	P	D	V	I	L	L	A	A	A	D	Y	E	K	T	Y	D	A	A	K	E	I	K	D	A	G	I	K	L	I	V	I	D	S	G	M	K	Q	D	I	A	D	I	T	V	A	T	D	N	I	Q	A	G	I	R	I	G	A	V	T	.	.	.	K	N
Template Known Secondary structure																T			S							S		T	T	T	T					T	T	T	G	G	G	T							S	S			S	S				S																			.	.	.
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																															.	.	.	.	.
Query SS confidence																															.	.	.	.	.
Query Sequence		T	S	S	S	H	Q	R	I	S	V	V	E	V	M	G	R	Y	C	G	D	L	T	L	A	A	A	I	A	G	.	.	.	.	.	G	C	E	F	V	V	V	P	E	V	E	F	S	R	E	D	L	V	N	E	I	K	A	G	I	A	K	G	K	K	H	A	I	V	A	I	T	E	H	M	C	D	V	D	E	L
Query Conservation																															.	.	.	.	.
Alig confidence																															.	.	.	.	.																												.
Template Conservation																																																															.
Template Sequence		L	V	R	K	S	G	K	I	G	V	I	S	F	V	K	N	S	K	T	A	M	D	R	E	E	G	L	K	I	G	L	S	D	D	S	N	K	I	E	A	I	Y	Y	C	D	S	N	Y	D	K	A	Y	D	G	T	V	E	L	L	T	K	.	Y	P	D	I	S	V	M	V	G	L	N	Q	Y	S	A	T	G	A
Template Known Secondary structure			T	S	S	S								S		T	T	S															G	G	G	G	G	G								T	T																.		T	T							S	S
Template Predicted Secondary structure																																																															.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		A	H	F	I	E	K	E	T	G	R	E	T	R	A	T	V	L	G	H	I	Q	.	.	.	R	G	G	S	P	V	P	Y	D	R	I	L	A	S	R	M	G	A	Y	A	I	D	L	L	L	A
Query Conservation																							.	.	.
Alig confidence							.																.	.	.
Template Conservation							.
Template Sequence		A	R	A	I	K	.	D	M	S	L	E	A	K	V	K	L	V	C	I	D	S	S	M	E	Q	E	G	I	F	E	A	M	V	V	Q	K	P	F	N	I	G	Y	L	G	V	E	K	A	L	K
Template Known Secondary structure							.		T	T		T	T	T	S							S		S					S
Template Predicted Secondary structure							.
Template SS confidence
		206	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions