Job Description P0A796 Confidence 25.47% Date Thu Jan 5 11:05:08 GMT 2012 Rank 196 Aligned Residues 182 % Identity 15% Template c2fn9A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form Resolution 1.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	G	V	L	T	S	G	G	D	A	P	G	M	N	A	A	I	R	G	V	V	R	S	A	L	T	E	G	L	E	V	M	G	I	Y	D	G	Y	L	G	L	Y	E	D	R	M	V	Q	L	D	R	Y	S	V	S	D	M	I	N	R	G	G	T	F	L	G	S	A	R	F	P	E	F	R	D	E	N	I	R
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Sequence		K	M	A	I	V	I	S	T	L	N	N	P	W	F	V	V	L	A	E	T	A	K	Q	R	A	E	Q	L	G	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	I	F	D	S	Q	N	.	.	.	.	D	T	A	K	E
Template Known Secondary structure								S		S	S	S																	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																																	.	.	.	.	.	.	40	.					.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.																														.																.
Query SS confidence																										.	.																														.																.
Query Sequence		A	V	A	I	E	N	L	K	K	R	G	I	D	A	L	V	V	I	G	G	D	G	S	Y	.	.	M	G	A	M	R	L	T	E	M	G	F	P	C	I	G	L	P	G	T	I	D	N	D	I	K	G	T	D	Y	.	T	I	G	F	F	T	A	L	S	T	V	V	E	A	I	.	D	R	L	R	D	T	S	S
Query Conservation																										.	.																														.																.
Alig confidence																										.	.																														.																.
Template Conservation
Template Sequence		S	A	H	F	D	A	I	I	A	A	G	Y	D	A	I	I	F	N	P	T	D	A	D	G	S	I	A	N	V	K	R	A	K	E	A	G	I	P	V	F	C	V	D	R	G	I	N	A	R	G	L	A	V	A	Q	I	Y	S	D	N	Y	Y	G	G	V	L	A	G	E	Y	F	V	K	F	L	K	E	K	Y	P
Template Known Secondary structure											T	T		S							S		T	T	T	T										T	T							S	S			S		S	S	S	S	S																											S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.										.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.
Query Sequence		S	H	Q	R	I	S	V	V	E	V	M	G	.	.	.	.	.	.	.	.	.	R	Y	C	G	D	L	T	L	A	A	A	I	A	G	G	C	E	F	V	V	V	P	E	V	E	F	S	R	E	D	L	V	N	E	I	K	A	G	I	A	K	G	K	K	H	A	I	V	A	I	T
Query Conservation														.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.											.
Template Conservation																																	.
Template Sequence		D	A	K	E	I	P	Y	A	E	L	L	G	I	L	S	A	Q	P	T	W	D	R	S	N	G	F	H	S	V	V	D	.	Q	Y	P	E	F	K	M	V	A	Q	Q	S	A	E	F	D	R	D	T	A	Y	K	V	T	E	Q	I	L	Q	A	H	P	E	I	K	A	I	W	C	G
Template Known Secondary structure		S		S											T	T																T	.	T	S	T	T										T	T																	T	T							S
Template Predicted Secondary structure																																	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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