Job Description P23865 Confidence 100.00% Date Thu Jan 5 11:40:05 GMT 2012 Rank 2 Aligned Residues 345 % Identity 15% Template c3k50A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative s41 protease; PDBTitle: crystal structure of putative s41 protease (yp_211611.1) from2 bacteroides fragilis nctc 9343 at 2.00 a resolution Resolution 2.00 Å

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		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	D	S	K	V	K	F	D	E	L	S	L	K	L	T	G	K	T	D	K	E	I	R	E	T	L	T	R	R	Y	K	F	A	I	R	R	L	A	Q	T	N	S	E	D	V	F	S	L	A	M	T	A	F	A	R	E	I	D	P	H	T	N	Y	L	S	P	R	N	T	E	Q	F	N	T	E	M	S	L	S
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation																						.	.	.	.	.	.	.	.	.	.																																												.
Template Sequence		R	W	P	E	Y	Y	P	D	I	W	I	D	S	V	X	R	Q	E	Y	L	.	.	.	.	.	.	.	.	.	.	W	Y	R	D	X	P	S	P	A	A	P	D	Y	F	Q	K	P	E	A	F	L	K	K	A	V	A	S	X	D	N	G	F	S	K	I	D	S	L	L	D	E	P	I	.	P	S	Y	G	F	D
Template Known Secondary structure																					T	.	.	.	.	.	.	.	.	.	.	T	G	G	G	S								S	S	S										S		T	T		S	S		S							S	S			.		B		S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																												.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.											.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		L	E	G	I	G	A	V	L	Q	M	D	D	D	Y	T	V	I	N	S	M	V	A	G	G	P	A	A	K	S	K	A	I	S	V	G	D	K	I	V	G	V	G	Q	T	G	K	P	M	V	D	V	I	G	W	R	L	D	D	V	V	.	.	A	L	I	K	G	P	K	G	S	K	V	R	L	E	I	L	P	A
Query Conservation																																																														.	.
Alig confidence																																.												.	.	.	.	.														.	.
Template Conservation																																.												.	.	.	.	.
Template Sequence		Y	T	L	Y	K	V	L	D	N	D	T	A	Y	N	A	L	I	S	Y	V	V	P	G	S	P	A	E	E	A	G	.	L	Q	R	G	H	W	I	X	X	X	N	.	.	.	.	.	G	D	Y	I	T	K	K	V	E	S	E	L	L	Q	G	S	T	R	Q	L	Q	I	G	V	Y	K	E	V	V	V	T	G	G
Template Known Secondary structure								T	T		S	S											T	T	S					T	T	.			T	T							T	.	.	.	.	.	T	B		B		T	T	T	G	G	G	G	T	S		S
Template Predicted Secondary structure																																.												.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140						.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370								.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		G	K	G	T	K	T	R	T	V	T	L	T	R	E	R	I	R	L	E	D	R	A	V	K	M	S	V	K	T	V	G	K	E	K	V	G	V	L	D	I	P	G	F	Y	V	G	L	T	.	.	.	.	.	.	.	D	D	V	K	V	Q	L	Q	K	L	E	K	Q	N	V	S	S	V	I	I	D	L	R	S	N
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence				.																				.																										.	.	.	.	.	.	.
Template Conservation				.																				.
Template Sequence		V	V	.	P	I	G	E	T	T	X	P	A	S	R	S	L	V	D	K	P	V	H	.	R	F	E	I	I	P	W	N	G	K	K	V	G	Y	L	X	Y	N	E	F	K	A	G	P	T	T	D	S	Q	A	Y	N	D	D	L	R	R	A	F	R	D	F	Q	T	G	G	V	N	E	F	V	L	D	L	R	Y	N
Template Known Secondary structure				.											B						S			.								T	T											B				S	S	T	T																		T	T									T	T
Template Predicted Secondary structure				.																				.
Template SS confidence
		179	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.					.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.									.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																					.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		G	G	G	A	L	T	E	A	V	S	L	S	G	L	F	I	P	A	G	.	.	.	.	P	I	V	Q	V	R	D	N	N	G	K	V	R	E	D	S	D	.	.	.	.	.	.	.	.	T	D	G	Q	V	F	Y	K	G	P	L	V	V	L	V	D	R	F	S	A	S	A	S	E	I	F	A	A	A	M	Q	D
Query Conservation																					.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	G	S	L	D	C	A	Q	L	L	C	T	X	L	A	P	A	D	K	X	N	Q	L	L	A	L	L	R	Y	S	D	K	R	V	E	A	N	Q	D	L	T	F	N	P	E	L	I	Q	S	G	A	N	L	N	L	S	T	V	Y	V	L	T	T	N	A	T	R	G	A	A	E	X	V	I	N	C	L	N	P
Template Known Secondary structure				B													S		G	G	G	T	T	S									T	T		G	G	G								G	G	G	T	T	T	S						S								T	T			T										T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		Y	G	R	A	L	V	V	G	E	P	T	F	G	K	G	T	V	Q	Q	Y	R	S	L	.	N	R	I	Y	D	Q	M	L	R	P	E	W	P	A	L	G	S	V	Q	Y	T	I	Q	K	F	Y	R	V	N	G	G	S	T	Q	R	K	G	V	T	P	D	I	I	M	P	T	G	N	E	E	T	E	T	G
Query Conservation																									.
Alig confidence																									.					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	X	K	V	V	L	I	G	T	K	T	A	G	E	Y	V	A	T	K	P	F	V	H	P	T	D	R	F	.	.	.	.	.	.	.	.	.	.	.	.	I	L	N	L	V	V	C	N	V	Y	N	A	E	E	K	S	D	Y	A	T	G	F	K	P	T	Y	E	Y	N	E	D	S	Y	L	S	T	Y	L
Template Known Secondary structure		T	S							S															S	S	S			.	.	.	.	.	.	.	.	.	.	.	.												T	T	S					T	T					S					G	G	G		G	G	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.													.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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