Job Description P23865 Confidence 98.82% Date Thu Jan 5 11:40:05 GMT 2012 Rank 72 Aligned Residues 74 % Identity 28% Template c2yt7A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3 Resolution UNK

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		246	.	.	.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.																																																				.
Query SS confidence															.	.	.	.	.																																																				.
Query Sequence		E	G	I	G	A	V	L	Q	M	D	D	D	Y	.	.	.	.	.	T	V	I	N	S	M	V	A	G	G	P	A	A	K	S	K	A	I	S	V	G	D	K	I	V	G	V	G	Q	T	G	K	P	M	V	D	V	I	G	W	R	L	D	D	V	V	A	L	I	K	G	.	P	K	G	S	K	V	R	L	E	I
Query Conservation															.	.	.	.	.																																																				.
Alig confidence															.	.	.	.	.																													.	.	.	.	.																			.
Template Conservation																																																.	.	.	.	.
Template Sequence		E	G	L	G	V	A	L	V	E	S	G	W	G	S	L	L	P	T	A	V	I	A	N	L	L	H	G	G	P	A	E	R	S	G	A	L	S	I	G	D	R	L	T	A	I	N	.	.	.	.	.	G	T	S	L	V	G	L	P	L	A	A	C	Q	A	A	V	R	E	T	K	S	Q	T	S	V	T	L	S	I
Template Known Secondary structure														S	S	S	S										T	T	S	T	T	G	G	G	S	S			T	T							S	.	.	.	.	.	S		B		T	T	S												T	T	T	S	S
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	A	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	C	P	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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