Job Description P23865 Confidence 98.73% Date Thu Jan 5 11:40:05 GMT 2012 Rank 115 Aligned Residues 79 % Identity 22% Template c2p3wB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:probable serine protease htra3; PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv) Resolution 1.70 Å

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		248	.	250	.	.	.	.	.	.											.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	A	V	L	Q	M	D	D	.	.	.	.	.	.	.	.	.	.	D	Y	T	V	I	N	S	M	V	A	G	G	P	A	A	K	S	K	A	I	S	V	G	D	K	I	V	G	V	G	Q	T	G	K	P	M	V	D	V	I	G	W	R	L	D	D	V	V	A	L	I	K	G	P	K	G	S	K	V	R	L
Query Conservation											.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																			.																	.	.	.	.	.	.	.												.	.
Template Conservation																																							.																	.	.	.	.	.	.	.												.	.
Template Sequence		I	G	I	R	M	R	T	I	T	P	S	L	V	D	E	P	E	V	S	S	G	I	Y	V	Q	E	V	A	P	N	S	P	S	Q	R	G	G	.	I	Q	D	G	D	I	I	V	K	V	N	G	R	P	L	V	.	.	.	.	.	.	.	D	S	S	E	L	Q	E	A	V	L	T	.	.	E	S	P	L	L	L
Template Known Secondary structure																					S	S								S	S	S						T	.			T	T							T	T					.	.	.	.	.	.	.	S											.	.		S	S
Template Predicted Secondary structure																																							.																	.	.	.	.	.	.	.												.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.								410	.	.	.	.	.	.	.	.	.	420			.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	L	P	A	G	K	G	T	K	T	R	T	V	T	L	T	R	E	R	I	R
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		E	V	R	R	.	.	.	G	N	D	D	L	L	F	S	I	A	P	E	V	V	M
Template Known Secondary structure						.	.	.	T	T
Template Predicted Secondary structure						.	.	.
Template SS confidence
		435	.	.	.				.	440	.	.	.	.	.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions