Job Description P23865 Confidence 98.59% Date Thu Jan 5 11:40:05 GMT 2012 Rank 158 Aligned Residues 71 % Identity 21% Template c2joaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:serine protease htra1; PDBTitle: htra1 bound to an optimized peptide: nmr assignment of pdz2 domain and ligand resonances Resolution UNK

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		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	Y	T	V	I	N	S	M	V	A	G	G	P	A	A	K	S	K	A	I	S	V	G	D	K	I	V	G	V	G	Q	T	G	K	P	M	V	D	V	I	G	W	R	L	D	D	V	V	A	L	I	K	G	P	K	G	S	K	V	R	L	E	I	L	P	A	G	K	G	T	K	T	R	T	V	T	L	T	R
Query Conservation
Alig confidence																					.												.	.	.	.	.						.	.											.	.												.	.	.
Template Conservation																					.												.	.	.	.	.						.	.											.	.												.	.	.
Template Sequence		I	S	G	A	Y	I	I	E	V	I	P	D	T	P	A	E	A	G	G	.	L	K	E	N	D	V	I	I	S	I	N	.	.	.	.	.	G	Q	S	V	V	.	.	S	A	N	D	V	S	D	V	I	K	.	.	R	E	S	T	L	N	M	V	V	R	R	.	.	.	G	N	E	D	I	M	I	T	V	I	P
Template Known Secondary structure				S								S	S	S						T	.			T	T					B		S	.	.	.	.	.	S		B			.	.	S										.	.			S	S								.	.	.	T	T
Template Predicted Secondary structure																					.												.	.	.	.	.						.	.											.	.												.	.	.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.						.	440	.	.	.			.	.	.	.	.	.	450	.	.	.			.	.	.	.	.	.	460	.	.	.	.				.	.	.	.	.	470	.	.	.	.	.
		336	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	I	D
Template Known Secondary structure		B
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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