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Job DescriptionP23865
Confidence100.00%DateThu Jan 5 11:40:05 GMT 2012
Rank1Aligned Residues354
% Identity27%Templatec1fc9A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:photosystem ii d1 protease; PDBTitle: photosystem ii d1 c-terminal processing protease
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  EAELNALWDSKVKFDELSLKLTGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAFAREIDPHTNYLSPRNTEQFN
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Template Sequence  QLLFLEAWRA. VDRAYVDKSFNGQSWFKL. . . . . . . RETYLKKEPMDRRAQTYDAIRKLLAVLDDPFTRFLEPSRLAALR
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S
TTGGG

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SSTT

TT

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   82.......90. ........100......... 110.........120.........130.........140.........150...
 
   239240.........250........ .260.........270.........280.........290.........300.........310.....
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Query Sequence  TEMSLSLEGIGAVLQMDDDY. . . TVINSMVAGGPAAKSKAISVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKV
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Template Sequence  RGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG. ARAGDVIVTVD. . . . . GTAVKGLSLYDVSDLLQGEADSQV
Template Known Secondary structure 
S
SS
B

S
SS
SS

TT
T.

TT
T.....T
TT


BSTT
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   154.....160.........170.........180.........190.. .......200... ......210.........220.......
 
   316...320.........330.........340........ .350.........360.........370.........380.......
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Query Sequence  RLEILPAGKGTKTRTVTLTRERIRLEDRAVKMS. . . . . . . . VKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSS
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Template Sequence  EVVLHAPGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAG
Template Known Secondary structure 
TT
SSS






SS

GGGS
TT
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STTTT
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   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  VIIDLRSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFSASASEIFAAAMQDYGRA
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Template Sequence  LVLDIRNNGGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAGALKDSKRG
Template Known Secondary structure 
TT






SS
SSS

S

S
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TT

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   308.310.........320.........330.........340.........350.........360.........370.........380.......
 
   468.470.........480.........490.........500.........510.........520.........530........
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Query Sequence  LVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTIQKFYRVNGGSTQRKGVTPDIIMPTGNEETE
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Template Sequence  LIAGERTFGKGLIQTVVDLSDGS. . . . . . . . . . . . GVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLPTD
Template Known Secondary structure  S






TTS
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TTS
BSTTT



S

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   388.390.........400.........410 .........420.........430.........440......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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