Job Description P23865 Confidence 100.00% Date Thu Jan 5 11:40:05 GMT 2012 Rank 1 Aligned Residues 354 % Identity 27% Template c1fc9A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:photosystem ii d1 protease; PDBTitle: photosystem ii d1 c-terminal processing protease Resolution 1.90 Å

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		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	E	L	N	A	L	W	D	S	K	V	K	F	D	E	L	S	L	K	L	T	G	K	T	D	K	E	I	R	E	T	L	T	R	R	Y	K	F	A	I	R	R	L	A	Q	T	N	S	E	D	V	F	S	L	A	M	T	A	F	A	R	E	I	D	P	H	T	N	Y	L	S	P	R	N	T	E	Q	F	N
Query Conservation
Alig confidence												.																			.	.	.	.	.	.	.
Template Conservation												.																			.	.	.	.	.	.	.
Template Sequence		Q	L	L	F	L	E	A	W	R	A	.	V	D	R	A	Y	V	D	K	S	F	N	G	Q	S	W	F	K	L	.	.	.	.	.	.	.	R	E	T	Y	L	K	K	E	P	M	D	R	R	A	Q	T	Y	D	A	I	R	K	L	L	A	V	L	D	D	P	F	T	R	F	L	E	P	S	R	L	A	A	L	R
Template Known Secondary structure												.						S		T	T	G	G	G							.	.	.	.	.	.	.								S			S	S														T	T			T	T
Template Predicted Secondary structure												.																			.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.								110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		T	E	M	S	L	S	L	E	G	I	G	A	V	L	Q	M	D	D	D	Y	.	.	.	T	V	I	N	S	M	V	A	G	G	P	A	A	K	S	K	A	I	S	V	G	D	K	I	V	G	V	G	Q	T	G	K	P	M	V	D	V	I	G	W	R	L	D	D	V	V	A	L	I	K	G	P	K	G	S	K	V
Query Conservation																						.	.	.
Alig confidence																						.	.	.																	.												.	.	.	.	.
Template Conservation																																									.												.	.	.	.	.
Template Sequence		R	G	T	A	G	S	V	T	G	V	G	L	E	I	T	Y	D	G	G	S	G	K	D	V	V	V	L	T	P	A	P	G	G	P	A	E	K	A	G	.	A	R	A	G	D	V	I	V	T	V	D	.	.	.	.	.	G	T	A	V	K	G	L	S	L	Y	D	V	S	D	L	L	Q	G	E	A	D	S	Q	V
Template Known Secondary structure				S		S	S		B			S							S	S		S	S									T	T							T	.			T	T							T	.	.	.	.	.	T				T	T												B	S	T	T
Template Predicted Secondary structure																																									.												.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.									.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.
Query Sequence		R	L	E	I	L	P	A	G	K	G	T	K	T	R	T	V	T	L	T	R	E	R	I	R	L	E	D	R	A	V	K	M	S	.	.	.	.	.	.	.	.	V	K	T	V	G	K	E	K	V	G	V	L	D	I	P	G	F	Y	V	G	L	T	D	D	V	K	V	Q	L	Q	K	L	E	K	Q	N	V	S	S
Query Conservation																																			.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	V	L	H	A	P	G	A	P	S	N	T	R	T	L	Q	L	T	R	Q	K	V	T	I	N	P	V	T	F	T	T	C	S	N	V	A	A	A	A	L	P	P	G	A	A	K	Q	Q	L	G	Y	V	R	L	A	T	F	N	S	N	T	T	A	A	A	Q	Q	A	F	T	E	L	S	K	Q	G	V	A	G
Template Known Secondary structure								T	T		S	S	S															S								S			G	G	G	S		T	T		S	S	S											S	T	T															T	T		S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	I	D	L	R	S	N	G	G	G	A	L	T	E	A	V	S	L	S	G	L	F	I	P	A	G	P	I	V	Q	V	R	D	N	N	G	K	V	R	E	D	S	D	T	D	G	Q	V	F	Y	K	G	P	L	V	V	L	V	D	R	F	S	A	S	A	S	E	I	F	A	A	A	M	Q	D	Y	G	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	L	D	I	R	N	N	G	G	G	L	F	P	A	G	V	N	V	A	R	M	L	V	D	R	G	D	L	V	L	I	A	D	S	Q	G	I	R	D	I	Y	S	A	D	G	N	S	I	D	S	A	T	P	L	V	V	L	V	N	R	G	T	A	S	A	S	E	V	L	A	G	A	L	K	D	S	K	R	G
Template Known Secondary structure							T	T																			S	S								S	S	S									S			S		S	S	S								T	T			T												T	T	S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	V	G	E	P	T	F	G	K	G	T	V	Q	Q	Y	R	S	L	N	R	I	Y	D	Q	M	L	R	P	E	W	P	A	L	G	S	V	Q	Y	T	I	Q	K	F	Y	R	V	N	G	G	S	T	Q	R	K	G	V	T	P	D	I	I	M	P	T	G	N	E	E	T	E
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	A	G	E	R	T	F	G	K	G	L	I	Q	T	V	V	D	L	S	D	G	S	.	.	.	.	.	.	.	.	.	.	.	.	G	V	A	V	T	V	A	R	Y	Q	T	P	A	G	V	D	I	N	K	I	G	V	S	P	D	V	Q	L	D	P	E	V	L	P	T	D
Template Known Secondary structure						S															T	T	S		.	.	.	.	.	.	.	.	.	.	.	.												T	T	S		B	S	T	T	T					S					T	T	S	S		S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410													.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions