Job Description P08202 Confidence 31.07% Date Thu Jan 5 11:00:56 GMT 2012 Rank 71 Aligned Residues 83 % Identity 23% Template c1zq1B_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																.	.	.																																				.
Query SS confidence																.	.																.	.	.																																				.
Query Sequence		T	P	D	E	I	T	A	I	C	R	D	A	N	Y	.	.	D	D	R	C	A	G	L	V	V	W	L	H	T	F	S	.	.	.	P	A	K	M	W	I	N	G	L	T	M	L	N	K	P	L	L	Q	F	H	T	Q	F	N	A	A	L	P	W	D	S	I	D	M	D	.	F	M	N	L	N	Q	T	A	H	G
Query Conservation																.	.																.	.	.																																				.
Alig confidence																.	.																.	.	.																							.	.	.	.										.									.	.
Template Conservation																																																										.	.	.	.																			.	.
Template Sequence		K	P	K	H	W	V	K	I	A	H	E	V	A	K	A	L	N	S	G	D	Y	G	V	V	V	A	H	G	T	D	T	X	G	Y	T	A	A	A	L	S	F	X	L	R	N	L	G	K	P	V	V	L	V	G	A	Q	.	.	.	.	R	S	S	D	R	P	S	S	D	A	A	X	N	L	I	C	S	V	.	.
Template Known Secondary structure																				T		S								T	T	T												S	B	T			S								S	.	.	.	.	S		T	T	S	T	T		S										.	.
Template Predicted Secondary structure																																																										.	.	.	.																			.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	E	F	G	F	I	G	A	R	M	R	Q	Q	H	A	V	V	T	G	H
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	R	X	A	T	S	E	V	A	E	V	X	V	V	X	H
Template Known Secondary structure		.	.	.	.	.	.				T	S	S	B		S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								224	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions