Job Description P08202 Confidence 32.15% Date Thu Jan 5 11:00:56 GMT 2012 Rank 65 Aligned Residues 54 % Identity 26% Template c1kxfA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:sindbis virus capsid protein; PDBTitle: sindbis virus capsid, (wild-type) residues 1-264,2 tetragonal crystal form (form ii) Resolution 2.38 Å

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		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.													.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	T	Y	H	F	E	K	G	N	D	L	V	L	G	S	H	M	L	E	V	C	P	S	I	A	A	E	E	K	P	I	L	D	V	Q	H	L	G	I	G	G	K	D	D	P	A	R	L	I	F	N	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	T	G	P	A	I	V	A	S	L	I
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.										.	.	.	.	.								.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.										.	.	.	.	.								.
Template Sequence		Y	T	S	E	H	P	E	G	.	.	.	F	Y	N	W	H	H	G	A	V	.	.	.	.	.	Q	Y	S	G	G	R	F	.	T	I	P	R	G	V	G	G	R	G	D	S	G	R	P	I	M	D	N	S	G	R	V	V	A	I	V	L	G	G	A	D	E	G	T	R	T	A	L	S	V	V
Template Known Secondary structure		B						S		.	.	.					T	T				.	.	.	.	.				T	T			.				T	T	S			T	T		T	T						T	T	S													T	T
Template Predicted Secondary structure										.	.	.										.	.	.	.	.								.
Template SS confidence
		180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.						.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions