Job Description P69908 Confidence 99.48% Date Thu Jan 5 12:12:17 GMT 2012 Rank 234 Aligned Residues 292 % Identity 11% Template d2hoxa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like Resolution 1.40

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		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	.	.	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V
Query Conservation																																																												.	.
Alig confidence																.	.																												.	.	.	.	.	.										.	.
Template Conservation																.	.																												.	.	.	.	.	.
Template Sequence		E	K	T	I	K	E	L	H	E	V	V	G	N	A	.	.	A	A	K	D	R	Y	I	V	F	G	V	G	V	T	Q	L	I	H	G	L	V	I	S	L	S	P	N	.	.	.	.	.	.	M	T	A	T	P	D	A	P	E	S	K	V	V	A	H	A	P	F	Y	P	V	F	R	E	Q	T	K	Y	F	D	K
Template Known Secondary structure													T		B	.	.			T	T							S														S			.	.	.	.	.	.	T	T	T		T	T	S									S	S												S
Template Predicted Secondary structure																.	.																												.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.																																.	.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.																																.	.	.	.	.	.	.						.	.	.	.	.	.
Template Sequence		K	G	Y	V	W	A	.	.	.	.	.	.	.	G	N	A	A	N	Y	V	N	V	S	N	P	E	Q	Y	I	E	M	V	T	S	P	N	N	P	E	G	L	L	R	H	.	.	.	.	.	.	.	A	V	I	K	G	.	.	.	.	.	.	C	K	S	I	Y	D	M	V	Y	Y	W	P	H	Y	T	P	I	K
Template Known Secondary structure		T	T					.	.	.	.	.	.	.			G	G	G	G	T	T		S		G	G	G							S	S		T	T	T						.	.	.	.	.	.	.		S	S	T	T	.	.	.	.	.	.								T	T		S	T	T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.																																.	.	.	.	.	.	.						.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.								.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	.	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L
Query Conservation																										.
Alig confidence						.	.	.	.	.	.	.														.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	K	A	D	.	.	.	.	.	.	.	E	D	I	L	L	F	T	M	S	K	F	T	G	H	S	G	S	R	F	G	W	A	L	I	K	D	E	S	V	Y	N	N	L	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	M	T	K	N	T	E	G	T	P	R	E	T	Q	L	R	S	L	K	V	L
Template Known Secondary structure		S		B		.	.	.	.	.	.	.		S										T	S		G	G	G																			.	.	.	.	.	.	.	.	.	.	.	.	.						T	S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.								.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.														.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
															335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.											.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	.	.	.	.	.	.	.	.	.	.	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																																																																.	.
Template Sequence		K	E	V	V	A	M	V	K	T	Q	K	G	T	M	R	D	L	N	T	F	G	F	K	K	L	R	E	R	W	V	N	I	T	A	L	L	D	Q	S	D	R	F	S	Y	Q	E	L	P	Q	S	E	Y	C	N	Y	F	R	R	M	R	P	P	S	P	S	Y	A	W	V	K	C	E	W	E	E	D	K	D	.	.
Template Known Secondary structure												T	T	S	T	T	S																					T	T	S	S	S								S					T	T	T	T								S								S	G	G	G		S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K
Query Conservation
Alig confidence		.	.	.																			.	.														.	.
Template Conservation		.	.	.																			.	.														.	.
Template Sequence		.	.	.	C	Y	Q	T	F	Q	N	G	R	I	N	T	Q	N	G	V	G	F	.	.	E	A	S	S	R	Y	V	R	L	S	L	I	K	.	.	T	Q	D	D	F	D	Q	L	M	Y	Y	L	K	D	M	V	K
Template Known Secondary structure		.	.	.								T	T						G	G	G	G	.	.	T	S		T	T							S	S	.	.																	T
Template Predicted Secondary structure		.	.	.																			.	.														.	.
Template SS confidence
					376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.			.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions