234 d2hoxa1 Probab=99.48   E-value=7.9e-11  Score=79.81  Aligned_columns=292  Identities=11%

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--EEEECCCHHHHHHHHHHCCC
Q ss_conf             9999999998398822267760364434058999999999997457776318776761--79956807999999997197
Q batch____        98 LRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKP--NLVCGPVQICWHKFARYWDV  175 (466)
Q Consensus        98 ~~~v~~l~~l~g~p~~~~~~~~G~~t~G~sea~~~a~~aar~~~~~~~~~~g~~~~~~--~i~~~~aH~s~~Ka~~~~g~  175 (466)
                      .+.|+-+....|-+  .-+.-.=++|+|+++++.+++.+....      ........|  +++..-........++++|.
T Consensus       106 ~~~i~~l~~~~g~~--~~~~~~iv~t~G~~~~l~~a~~aL~~p------Gd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~  177 (425)
T d2hoxa1         106 EKTIKELHEVVGNA--AAKDRYIVFGVGVTQLIHGLVISLSPN------MTATPDAPESKVVAHAPFYPVFREQTKYFDK  177 (425)
T ss_dssp             HHHHHHHHHHHTCB--CCTTCEEEEESHHHHHHHHHHHHHSCC------TTTCTTSCCEEEEECSSCCHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCC--CCCCCEEEEECCHHHHHHHHHHHHCCC------CCCCCCCCCCEEEECCHHHHHHHHHHHHCCC
T ss_conf             99999998850886--788776999468899999999986488------8612356774357300237789999985599


Q ss_pred             EEEEEECCCCCCEECHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCC
Q ss_conf             38999606875515799999850228859999518878642378999999999850100588079841023203310345
Q batch____       176 ELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVA  255 (466)
Q Consensus       176 ~~~~vp~~~~~~~~d~~~l~~~I~~~t~~Vv~~~gtt~tG~iDpi~eIa~i~~~~~a~~~~di~lHVDaA~gg~~~~~~~  255 (466)
                      ..+.++       +|.+.+++++++++.+++.+.++|.||.+-+       +.+++      +++.+|-+|+.....-..
T Consensus       178 ~~~~~~-------~d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~------~~~i~De~y~~~~~~~~~  237 (425)
T d2hoxa1         178 KGYVWA-------GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKG------CKSIYDMVYYWPHYTPIK  237 (425)
T ss_dssp             TTEEEE-------EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTT------CEEEEECTTCSTTTSCCC
T ss_pred             CCCCCC-------CCHHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECC------CEEEEECCCCCCCCCCCC
T ss_conf             744424-------7988999724888579998178888560654-------23239------689971432343323333


Q ss_pred             CCCCCCCCCCCCCEEEECCCCCCC-CCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             652111575662178964633685-6657279998388897787503766458877787547765306899999999972
Q batch____       256 PDIVWDFRLPRVKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL  334 (466)
Q Consensus       256 ~~~~~d~~~~~vDSis~s~HK~~~-~p~g~g~l~~rd~~~l~~~~~~~~~ylg~~~~~~~l~~sr~~~~~l~~~~~l~~l  334 (466)
                      ....       -+....++-|.++ .-.-+|+++..++........             ....+..+.....+.+++..+
T Consensus       238 ~~~~-------~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~-------------~~~~~~~~~s~~~Q~aA~~~L  297 (425)
T d2hoxa1         238 YKAD-------EDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN-------------YMTKNTEGTPRETQLRSLKVL  297 (425)
T ss_dssp             SCBC-------CSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHH-------------HHHHHTSSCCHHHHHHHHHHH
T ss_pred             CCCC-------CEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHH-------------HHHCCCCCCCHHHHHHHHHHH
T ss_conf             4568-------54999815510123323101899689899999998-------------641057773689999999996


Q ss_pred             -------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC----------CCCCEEEEEEEECCCCCCCC
Q ss_conf             -------------7776999999999999999999860698799817887----------77650799994068765868
Q batch____       335 -------------GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRP----------DEGIPAVCFKLKDGEDPGYT  391 (466)
Q Consensus       335 -------------G~~G~~~~~~~~~~la~~l~~~L~~~~~~ei~~~~~~----------~~~l~~V~F~~~~~~~~~~~  391 (466)
                                   +.+-++...+...+..+.+.+.|.+.+.|.+...+..          ++.-..+-+++.......  
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~~~~~--  375 (425)
T d2hoxa1         298 KEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKD--  375 (425)
T ss_dssp             HHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCS--
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH--
T ss_conf             020134565555489999999999999999999998635763003456554322100137787616998678980899--


Q ss_pred             HHHHHHHHHHCCCEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999998698503655788656845999995699999999999999999999
Q batch____       392 LYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK  446 (466)
Q Consensus       392 ~~~i~~~L~~~G~~v~~~~lp~~~~~~~~LRi~v~~~~t~~~~e~~v~~l~~~i~  446 (466)
                         +...|.++|..+-.-..=  ..+...+|+++..  +.++.|.+++.|++.++
T Consensus       376 ---~~~lL~e~GI~v~pGs~F--G~~~~~vRiSl~~--~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         376 ---CYQTFQNGRINTQNGVGF--EASSRYVRLSLIK--TQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             ---HHHHHHHTTEECEEGGGG--TSCTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHCCEEEECCCCC--CCCCCEEEEEECC--CHHHHHHHHHHHHHHHH
T ss_conf             ---999999669499717023--8988659999139--98999999999999872