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Job DescriptionP0AC53
Confidence91.50%DateThu Jan 5 11:17:11 GMT 2012
Rank55Aligned Residues309
% Identity14%Templatec3evnA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.........60.........70.........80.........90.
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Query Sequence  LVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTRIIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNL
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Template Sequence  YGVVST. AKVAPR. FIEGVRLA. . . . . . . GNGEVVAVSSRTLES. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AQA
Template Known Secondary structure  B
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SST.................................T

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   8.10... ...... 20....... ..30.........40.. ...
 
   92.......100.........110.........120.........130.........140.........150.........160.........170.
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Query Sequence  DVNDTAAFSRLGAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEINDQVGEYFEECQ
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Template Sequence  KYHLPKAYDKLEDMLADESIDVI. YVATINQDHYKVAKAALLA. . . . . GKHVLVEKPFTLTYDQANELFALAESC. . NLF
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S
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GGGT.....T
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Query Sequence  VYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVGIEGRWGYFDKA. . GQMRDMIQNHLLQILCMIAM
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Template Sequence  LMEAQKSVFIPMTQVIKKLLASGEI. . . . . . . GEVISISSTTAYPNIDHVTWFRELELGGGTVHFMAP. YALSYLQYLFD
Template Known Secondary structure 
SS
SSTTTT.......
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TTGGGSTTTT
GGGT
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   121........130.........140..... ....150.........160.........170.........180. ........190..
 
   250.........260.........270.........280.........290.........300.........310.........320.........
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Query Sequence  SPPSDLSADSIRDEKVKVLKSLRRIDRSNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWA
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Template Sequence  ATITH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . ASGTAT. . . . . . . . . . . . . . . . . . FPKGQSDSQSKLLLQLSN. . . .
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   193.... ..200... ......210.........220.
 
   330.........340.........350.........360.........370.........380.........390.........400.........
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Query Sequence  GVPFYLRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPGLDHKHNLQITKLDLSYS
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Template Sequence  GVLVDIFLTTRLNLP. HEMIIYG. . . . . . . . . . . . . . . . TEGRLIIPHFWKTTHAKLVRNDTS. . . . . . ARTIQVD. . . .
Template Known Secondary structure  S
SSS


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   222.......230...... ...240... ......250.........260....... ..270....
 
   410.........420.........430... ......440.........450.........
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Query Sequence  ETFNQTHLADAYERLLLETMRGIQ. ALFVRRDEVEEAWKWVDSITEAWAMD
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Template Sequence  . . . MVSDFEKEAYHVSQMILEGQRVSHIMTPQLTLSGVKIIEDLYRSWGKE
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TTTT
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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