Job Description P0AC53 Confidence 97.57% Date Thu Jan 5 11:17:11 GMT 2012 Rank 12 Aligned Residues 341 % Identity 18% Template c3e18A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of nad-binding protein from listeria innocua Resolution 1.95 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	D	L	V	I	F	G	A	K	G	D	L	A	R	R	K	L	L	P	S	L	Y	Q	L	E	K	A	G	Q	L	N	P	D	T	R	I	I	G	V	G	R	A	D	W	D	K	A	A	Y	T	K	V	V	R	E	A	L	E	T	F	M	K	E	T	I	D	E	G	L	W	D	T	L	S	A	R	L	D	F
Query Conservation
Alig confidence										.						.										.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation										.						.										.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		K	Y	Q	L	V	I	V	G	.	Y	G	G	M	G	.	S	Y	H	V	T	L	A	S	A	.	.	.	.	.	.	.	A	D	N	L	E	V	H	G	V	F	D	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	K	R	E	A	A	A	Q	K	.	.	.
Template Known Secondary structure										.		S				.									T	.	.	.	.	.	.	.	S	T	T									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	.	.	.
Template Predicted Secondary structure										.						.										.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10		.	.	.	.	.		.	.	.	.	20	.	.	.	.								.	.	.	.	.	30	.	.	.	.	.	.	.																								.	.	40	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	N	L	D	V	N	D	T	A	A	F	S	R	L	G	A	M	L	D	Q	K	N	R	I	T	I	N	Y	F	A	M	P	P	S	T	F	G	A	I	C	K	G	L	G	E	A	K	L	N	A	K	P	A	R	V	V	M	E	K	P	L	G	T	S	L	A	T	S	Q	E	I	N	D	Q	V	G	E	Y	F	E
Query Conservation
Alig confidence		.	.	.	.	.	.																					.																				.	.	.	.	.
Template Conservation		.	.	.	.	.	.																					.																				.	.	.	.	.
Template Sequence		.	.	.	.	.	.	G	L	K	I	Y	E	S	Y	E	A	V	L	A	D	E	K	V	D	A	V	.	L	I	A	T	P	N	D	S	H	K	E	L	A	I	S	A	L	E	A	.	.	.	.	.	G	K	H	V	V	C	E	K	P	V	T	M	T	S	E	D	L	L	A	I	M	D	V	A	K	R	V	N	K
Template Known Secondary structure		.	.	.	.	.	.	T			B		S									T	T					.				S		G	G	G											T	.	.	.	.	.	T							S	S			S	S															T
Template Predicted Secondary structure		.	.	.	.	.	.																					.																				.	.	.	.	.
Template SS confidence
								48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		E	C	Q	V	Y	R	I	D	H	Y	L	G	K	E	T	V	L	N	L	L	A	L	R	F	A	N	S	L	F	V	N	N	W	D	N	R	T	I	D	H	V	E	I	T	V	A	E	E	V	G	I	E	G	R	W	G	Y	F	.	.	D	K	A	G	Q	M	R	D	M	I	Q	N	H	L	L	Q	I	L	C	M
Query Conservation																																																												.	.
Alig confidence												.	.																	.	.	.	.	.	.	.																								.	.											.
Template Conservation												.	.																	.	.	.	.	.	.	.																																				.
Template Sequence		H	F	M	V	H	Q	N	R	R	W	.	.	D	E	D	F	L	I	I	K	E	M	F	E	Q	K	T	I	.	.	.	.	.	.	.	G	E	M	F	H	L	E	S	R	V	H	G	A	N	G	I	P	G	D	W	R	H	L	K	A	H	G	G	G	M	V	L	D	W	G	.	V	H	L	L	D	Q	L	L	F
Template Known Secondary structure								G	G	G	G	.	.														T	T	T	.	.	.	.	.	.	.	S	S											S	S		S		S	S	G	G	G		G	G	G	T		S					T		.
Template Predicted Secondary structure												.	.																	.	.	.	.	.	.	.																																				.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	M	S	P	P	S	D	L	S	A	D	S	I	R	D	E	K	V	K	V	L	K	S	L	R	R	I	D	R	S	N	V	R	E	K	T	V	R	G	Q	Y	T	A	G	F	A	Q	G	K	K	V	P	G	Y	L	E	E	E	G	A	N	K	S	S	N	T	E	T	F	V	A	I	R	V	D	I	D	N	W
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		L	V	D	S	N	V	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	A	N	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	L	G	D	E	V	D	D	G	F	V	T	F	I	T	F	E	N	.
Template Known Secondary structure					S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T			S	S		S									T	T	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		186	.	.	.	190	.	.	.																														.	.	.	.	.	.																		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	W	A	G	V	P	F	Y	L	R	T	G	K	R	L	P	T	K	C	S	E	V	V	V	Y	F	K	T	P	E	L	N	L	F	K	E	S	W	Q	D	L	P	Q	N	K	L	T	I	R	L	Q	P	D	E	G	V	D	I	Q	V	L	N	K	V	P	G	L	D	H	K	H	N	L	Q	I	T	K	L	D	L
Query Conservation
Alig confidence		.	.	.																															.	.	.	.	.
Template Conservation		.	.	.																															.	.	.	.	.
Template Sequence		.	.	.	G	I	T	A	Q	I	E	V	G	T	T	N	F	I	K	L	P	R	W	Y	V	K	G	T	E	G	T	G	I	I	.	.	.	.	.	H	D	W	D	L	S	G	E	I	V	K	P	T	A	L	A	K	T	S	E	P	T	P	I	K	A	G	Q	G	L	T	K	T	M	A	P	P	S	E	E	A	T
Template Known Secondary structure		.	.	.	S									S	S		S	S				S						T	T						.	.	.	.	.		S	T	T										T	T	T	T	T									T	T				S	T	T	S				G	G	G
Template Predicted Secondary structure		.	.	.																															.	.	.	.	.
Template SS confidence
					219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	S	E	T	F	N	Q	T	H	L	A	D	A	Y	E	R	L	L	L	E	T	M	R	G	I	Q	A	L	F	V	R	R	D	E	V	E	E	A	W	K	W	V	D	S	I	T	E	A	W	A	M	D	N	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	T	L	S	L	P	A	P	A	K	L	A	P	S	F	Y	N	N	F	V	D	V	L	N	N	T	S	E	P	I	V	Q	N	E	E	V	Y	Q	V	L	K	L	I	E	A	I	F	E	A	A	E	T	N	R	T
Template Known Secondary structure														S											T	T	S	S			S	S																						T	S
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.