Job Description P0AC53 Confidence 96.23% Date Thu Jan 5 11:17:11 GMT 2012 Rank 35 Aligned Residues 302 % Identity 19% Template c3dtyA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae Resolution 2.04 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		E	T	I	D	E	G	L	W	D	T	L	S	A	R	L	D	F	C	N	L	D	V	N	D	T	A	A	F	S	R	L	G	A	M	L	D	Q	K	.	.	.	.	N	R	I	T	I	N	Y	F	A	M	P	P	S	T	F	G	A	I	C	K	G	L	G	E	A	K	L	N	A	K	P	A	R	V	V	M	E	K
Query Conservation																																								.	.	.	.
Alig confidence																	.	.	.	.	.																			.	.	.	.																													.	.	.	.	.
Template Conservation																	.	.	.	.	.																																																			.	.	.	.	.
Template Sequence		F	D	I	D	P	I	R	G	S	A	F	G	E	Q	L	.	.	.	.	.	G	V	D	S	E	R	C	Y	A	D	Y	L	S	X	F	E	Q	E	A	R	R	A	D	G	I	Q	A	V	S	I	A	T	P	N	G	T	H	Y	S	I	T	K	A	A	L	E	A	G	L	H	.	.	.	.	.	V	V	C	E	K
Template Known Secondary structure				S	S											T	.	.	.	.	.	T			G	G	G	B		S	S									T	T		T	T			S						S		G	G	G											T	T			.	.	.	.	.					S
Template Predicted Secondary structure																	.	.	.	.	.																																																			.	.	.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																					.	.	.	.	.																					.	.
Query SS confidence																					.	.	.	.	.																					.	.
Query Sequence		P	L	G	T	S	L	A	T	S	Q	E	I	N	D	Q	V	G	E	Y	.	.	.	.	.	F	E	E	C	Q	V	Y	R	I	D	H	Y	L	G	K	E	T	V	L	N	.	.	L	L	A	L	R	F	A	N	S	L	F	V	N	N	W	D	N	R	T	I	D	H	V	E	I	T	V	A	E	E	V	G	I	E
Query Conservation																					.	.	.	.	.																					.	.
Alig confidence																					.	.	.	.	.																					.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	C	F	T	V	E	Q	A	E	N	L	R	E	L	S	H	K	H	N	R	I	V	G	V	T	Y	G	Y	A	G	H	Q	L	I	E	Q	A	R	E	X	I	A	A	G	E	L	G	D	V	R	X	V	H	X	Q	F	A	H	G	F	H	S	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S		S															T	T								G	G	G	G	S												T	T	T	T		S												T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	W	G	Y	F	D	K	A	G	Q	M	R	D	M	I	Q	N	H	L	L	Q	I	L	C	M	I	A	M	S	P	P	S	D	L	S	A	D	S	I	R	D	E	K	V	K	V	L	K	S	L	R	R	I	D	R	S	N	V	R	E	K	T	V	R	G	Q	Y	T	A	G	F	A	Q	G	K	K	V	P	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	P	S	Y	V	L	G	D	V	G	.	T	H	P	L	Y	L	S	E	V	X	L	P	D	L	K	I	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	X	C	S	R	Q	.	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure		.	.	.	.	.	.	.			S					T	T	.												T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template SS confidence
									199	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																													.	.	.	.	230	.											.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	E	E	E	G	A	N	K	S	S	N	T	E	T	F	V	A	I	R	V	D	I	D	N	W	R	W	A	G	V	P	F	Y	L	R	T	G	K	R	L	P	T	K	C	S	E	V	V	V	Y	F	K	T	P	E	L	N	L	F	K	E	S	W	Q	D	L	P	Q	N	K	L	T	I	R	L	Q	P	D	E
Query Conservation
Alig confidence						.	.	.	.	.																	.	.	.	.																																					.	.	.
Template Conservation						.	.	.	.	.																	.	.	.	.																																					.	.	.
Template Sequence		F	V	A	S	.	.	.	.	.	R	A	P	L	E	D	N	A	Y	T	L	X	E	Y	E	G	.	.	.	.	G	A	X	G	X	V	W	S	S	A	V	N	A	G	S	X	H	G	Q	K	I	R	V	I	G	S	R	A	S	L	E	W	W	D	E	R	.	.	.	P	N	Q	L	S	F	E	V	Q	G	Q	P
Template Known Secondary structure		S	S	G	G	.	.	.	.	.	G	T	T	S		S									T	T	.	.	.	.	S									S			T	T		S										S	S							T	T	S	.	.	.	T	T							T	T	S
Template Predicted Secondary structure						.	.	.	.	.																	.	.	.	.																																					.	.	.
Template SS confidence
		233	.	.	.						.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.					.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430													.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	D	I	Q	V	L	N	K	V	P	G	L	D	H	K	H	N	L	Q	I	T	K	L	D	L	S	Y	S	E	T	F	N	Q	T	H	L	A	D	A	Y	E	R	L	L	L	E	T	M	R	.	.	.	.	.	.	.	.	.	.	.	.	G	I	Q	A	L	F	V	R	R	D	E	V	E	E	A	W	K	W
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.											.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.											.	.	.	.	.
Template Sequence		.	.	.	A	Q	I	L	E	R	G	X	G	Y	.	.	.	.	.	L	H	P	N	A	L	I	D	D	R	I	G	G	G	H	P	E	G	L	F	E	A	W	A	N	L	Y	Y	R	F	A	L	A	X	D	A	T	D	R	S	D	T	Q	A	L	S	A	V	R	Y	P	G	I	D	A	G	V	E	G	V	R	W
Template Known Secondary structure		.	.	.						T	T		T	T	.	.	.	.	.	S		G	G	G	T	T	T			S		T	T	S																								T	T							T
Template Predicted Secondary structure		.	.	.											.	.	.	.	.
Template SS confidence
					301	.	.	.	.	.	.	.	.	310						.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	S	I	T	E	A	W	A	M	D	N	D	A	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	R	C	V	L	S	A	D	N	D	S	I	W	V	A
Template Known Secondary structure											T	T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions