Phyre 2 alignment of P0AC53 with c2p2sA

Job Description P0AC53
Confidence 44.55% Date Thu Jan 5 11:17:11 GMT 2012

Rank 91 Aligned Residues 274

% Identity 16% Template c2p2sA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_050235.1) from2 erwinia carotovora atroseptica scri1043 at 1.25 a resolution

Resolution 1.25 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	S	R	L	G	A	M	L	D	Q	K	N	R	I	T	I	N	Y	F	A	M	P	P	S	T	F	G	A	I	C	K	G	L	G	E	A	K	L	N	A	K	P	A	R	V	V	M	E	K	P	L	G	T	S	L	A	T	S	Q	E	I	N	D	Q	V	G	E	Y	F	E	E	C	Q	V	Y	R	I	D	H	Y
Query Conservation
Alig confidence																	.																					.	.	.	.	.
Template Conservation																	.																					.	.	.	.	.
Template Sequence	A	A	S	A	E	Q	L	I	T	D	A	S	I	D	L	I	.	A	C	A	V	I	P	C	D	R	A	E	L	A	L	R	T	L	D	A	G	.	.	.	.	.	K	D	F	F	T	A	K	P	P	L	T	T	L	E	Q	L	D	A	V	Q	R	R	V	A	E	T	G	R	K	F	A	V	Y	F	N	E	R	I
Template Known Secondary structure		S							T		T	T					.				S		G	G	G											T	T	.	.	.	.	.							S	S			S																								T	T	T	T
Template Predicted Secondary structure																	.																					.	.	.	.	.
Template SS confidence
	54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.

	179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence	L	G	K	E	T	V	L	N	L	L	A	L	R	F	A	N	S	L	F	V	N	N	W	D	N	R	T	I	D	H	V	E	I	T	V	A	E	E	V	G	I	E	G	R	W	G	Y	F	D	K	A	.	.	.	G	Q	M	R	D	M	I	Q	N	H	L	L	Q	I	L	C	M	I	A	M	S	P	P	S	D	L
Query Conservation																																																				.	.	.
Alig confidence				.																	.	.	.	.	.	.	.																									.	.	.																									.	.
Template Conservation				.																	.	.	.	.	.	.	.																																																				.	.
Template Sequence	N	V	D	.	S	A	L	F	A	G	E	L	V	Q	R	G	E	I	G	R	.	.	.	.	.	.	.	V	I	Q	T	X	G	V	G	P	H	R	E	R	G	A	R	P	D	W	F	Y	Q	K	R	Q	Y	G	G	I	L	C	D	I	G	I	H	Q	I	E	Q	F	L	Y	F	T	G	N	T	N	A	R	.	.
Template Known Secondary structure	T			.											T	T	T	T	S	S	.	.	.	.	.	.	.											B			S				G	G	G	G												T													T		S				.	.
Template Predicted Secondary structure				.																	.	.	.	.	.	.	.																																																				.	.
Template SS confidence
	128	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.								.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	A	D	S	I	R	D	E	K	V	K	V	L	K	S	L	R	R	I	D	R	S	N	V	R	E	K	T	V	R	G	Q	Y	T	A	G	F	A	Q	G	K	K	V	P	G	Y	L	E	E	E	G	A	N	K	S	S	N	T	E	T	F	V	A	I	R	V	D	I	D	N	W	R	W	A	G	V	P	F	Y	L
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	T	S	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	Y	H	H	P	H	H	P	E	F	E	D	F	G	D	A	X	L	L	G	D	N	.	.	.	.	G	A	T	G	Y	F
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.			S	S		T	T	S	T	T			S									T	T	.	.	.	.	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template SS confidence
																													198	.	200	.	.	.														.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.

	336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	T	G	K	R	L	P	T	K	C	S	E	V	V	V	Y	F	K	T	P	E	L	N	L	F	K	E	S	W	Q	D	L	P	Q	N	K	L	T	I	R	L	Q	P	D	E	G	V	D	I	Q	V	L	N	K	V	P	G	L	D	H	K	H	N	L	Q	I	T	K	L	D	L	S	Y	S	E	T	F	N	Q	T
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence	R	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	F	T	P	D	G	L	S	V	W	G	D	G	R	L	T	I	L	G	T	E	G	.	Y	I	E	I	R	K	Y	V	D	L	T	R	G	E	S	N	V	V	Y	L	V	N	G	K	G	E	Q	R	F	T	P	A	G
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	B			T	T	S	S	S	S										S	S		.							S		B	T	T	T	T	B		S						S	S	S								T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
	233	.																						.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

	416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	L	A	D	A	Y	E	R	L	L	L	E	T	M	R	G	I	Q	A	L	F	V	R	R	D	E	V	E	E	A	W	K	W	V	D	S	I	T	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	V	E	R	A	F	F	P	D	F	L	R	D	C	R	E	R	T	E	N	A	X	S	Q	S	H	I	F	K	A	T	E	L	S	I	L	A	Q	Q	A
Template Known Secondary structure	S	S																			S	S
Template Predicted Secondary structure
Template SS confidence
	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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