Return to main results Retrieve Phyre Job Id

Job DescriptionP23893
Confidence100.00%DateThu Jan 5 11:40:26 GMT 2012
Rank41Aligned Residues354
% Identity20%Templated2bwna1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution2.1

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40... ......50.........60...... ...70.........80....... ..90..
Predicted Secondary structure 









......









.







.......

Query SS confidence 
















. . . . . .






















.




















. . . . . . .




Query Sequence  TGVGGTPLFIEKADGAY. . . . . . LYDVDGKAYIDYVGSWGPMVLGH. NHPAIRNAVIEAAERGLSFGA. . . . . . . PTEME
Query Conservation        
       
  ......
 
 

   

         


.  
 
  
             .......     
Alig confidence 
















......













...





.




















.......




Template Conservation      
                       
   


 
...
 



   
 
  
   
               
     
Template Sequence  EGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCG. . . NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYH
Template Known Secondary structure  TT






TTSTT
TTS

S
...S
TTSGGG

S


SBTTTB


Template Predicted Secondary structure 





























...























Template SS confidence 















































































   17..20.........30.........40.........50... ......60.........70.........80.........90...
 
   93......100.........110.........120.........130.........140.........150.........160.........170..
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  VKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADF
Query Conservation    


 
         
    




   

  
    

  

     


                            
Alig confidence 










.



















.






























................
Template Conservation    
   

   .
        


 
      . 
        
      
          
  ................
Template Sequence  RRLEAEIAGLH. QKEAALVFSSAYNANDATLS. TLRVLFPGLIIYSDSLNHASMIEGIKRNAGP. . . . . . . . . . . . . . . .
Template Known Secondary structure  T.T
SS
.STT
TT

S


................
Template Predicted Secondary structure 
.




.









................
Template SS confidence 















































































   94.....100.... .....110.........120.... .....130.........140.........150.....
 
   173......180.........190.... .....200.........210.........220.........230.........240... ......
Predicted Secondary structure 









.

























..




Query SS confidence 





















.
















































. .





Query Sequence  AKYTLTCTYNDLASVRAAFEQY. PQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVMTGF. . RVALAG
Query Conservation            
   
   
   .    



 


    
        
  
  
    
  

 


  
 ..
 
   
Alig confidence  ...


















.




















....























..





Template Conservation  ...       
       
          
         
 
  ....   
  
    
  





   
        
Template Sequence  . . . KRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP. . . . IKEICDIAEEFGALTYIDEVHAVGMYGPRGAG
Template Known Secondary structure  ...
TT
S
TTS
SB
TTT

B

....T

TTTTTTSSTTS

Template Predicted Secondary structure  ...


















....















Template SS confidence 















































































   156...160.........170.........180.........190...... ...200.........210.........220........
 
   250.........260.........270.........280.........290.........300.........310.........320.........
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  AQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTT
Query Conservation           

    
 
  
                          
    
    

                     
Alig confidence 





































































.








Template Conservation                          

                                            .         
Template Sequence  VAERDGLMHRIDIFNGTLAAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAE. GQKLRDAQQ
Template Known Secondary structure  T
GGG
S




S



TSB


TS.
Template Predicted Secondary structure 





































.
Template SS confidence 















































































   229230.........240.........250.........260.........270.........280.........290........ .300.......
 
   330.........340.........350.........360.........370.........380.........390........ .400
Predicted Secondary structure 

























.........
Query SS confidence 




































































. . . . . . . . .

Query Sequence  RLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAF. . . . . . . . . EA
Query Conservation       
  
         
 
 
    
                            
   

   
   .........  
Alig confidence 
















.











.............

























.........

Template Conservation           
       .            .............             
   

 
              

Template Sequence  MHAKVLKMRLKALGMPI. IDHGSHIVPVVI. . . . . . . . . . . . . GDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLR
Template Known Secondary structure  T

B.


SSS

.............





TTTS
TT

Template Predicted Secondary structure 


.




.............














Template SS confidence 















































































   309310.........320..... ....330....... ..340.........350.........360.........370....
 
   401........410.........420...
Predicted Secondary structure 



Query SS confidence 






















Query Sequence  GFMSVAHSMEDINNTIDAARRVF
Query Conservation    

   
 



     
   
Alig confidence 






















Template Conservation   
     
 



 

 

  
 
Template Sequence  FTPSPVHDLKQIDGLVHAMDLLW
Template Known Secondary structure 


TTS

Template Predicted Secondary structure 






Template SS confidence 






















   375....380.........390.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions