Job Description P23893 Confidence 100.00% Date Thu Jan 5 11:40:26 GMT 2012 Rank 41 Aligned Residues 354 % Identity 20% Template d2bwna1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.1

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.								.	.	90	.	.
Predicted Secondary structure																			.	.	.	.	.	.																								.																						.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.																								.																						.	.	.	.	.	.	.
Query Sequence		T	G	V	G	G	T	P	L	F	I	E	K	A	D	G	A	Y	.	.	.	.	.	.	L	Y	D	V	D	G	K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	.	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	.	.	.	.	.	.	.	P	T	E	M	E
Query Conservation																			.	.	.	.	.	.																								.																						.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.															.	.	.							.																						.	.	.	.	.	.	.
Template Conservation																																							.	.	.
Template Sequence		E	G	R	Y	R	T	F	I	D	I	E	R	E	K	G	A	F	P	K	A	Q	W	N	R	P	D	G	G	K	Q	D	I	T	V	W	C	G	.	.	.	N	D	Y	L	G	M	G	Q	H	P	V	V	L	A	A	M	H	E	A	L	E	A	V	G	A	G	S	G	G	T	R	N	I	S	G	T	T	A	Y	H
Template Known Secondary structure		T	T												T	T	S	T	T							T	T	S									S		.	.	.	S		T	T	S	G	G	G																	S				S	B	T	T	T	B
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	M	A	Q	L	V	T	E	L	V	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F
Query Conservation
Alig confidence													.																					.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																					.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	L	E	A	E	I	A	G	L	H	.	Q	K	E	A	A	L	V	F	S	S	A	Y	N	A	N	D	A	T	L	S	.	T	L	R	V	L	F	P	G	L	I	I	Y	S	D	S	L	N	H	A	S	M	I	E	G	I	K	R	N	A	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	.	T		S						S												.						S	T	T							T	T												S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.																					.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.
Predicted Secondary structure																								.																																																		.	.
Query SS confidence																								.																																																		.	.
Query Sequence		A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	.	P	Q	E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	.	.	R	V	A	L	A	G
Query Conservation																								.																																																		.	.
Alig confidence		.	.	.																				.																						.	.	.	.																									.	.
Template Conservation		.	.	.																																										.	.	.	.
Template Sequence		.	.	.	K	R	I	F	R	H	N	D	V	A	H	L	R	E	L	I	A	A	D	D	P	A	A	P	K	L	I	A	F	E	S	V	Y	S	M	D	G	D	F	G	P	.	.	.	.	I	K	E	I	C	D	I	A	E	E	F	G	A	L	T	Y	I	D	E	V	H	A	V	G	M	Y	G	P	R	G	A	G
Template Known Secondary structure		.	.	.						T	T												S		T	T	S								S	B		T	T	T			B			.	.	.	.												T								T	T	T	T	T	T	S	S	T	T	S
Template Predicted Secondary structure		.	.	.																																										.	.	.	.
Template SS confidence
					156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T
Query Conservation
Alig confidence																																																																								.
Template Conservation																																																																								.
Template Sequence		V	A	E	R	D	G	L	M	H	R	I	D	I	F	N	G	T	L	A	A	Y	G	V	F	G	G	Y	I	A	A	S	A	R	M	V	D	A	V	R	S	Y	A	P	G	F	I	F	S	T	S	L	P	P	A	I	A	A	G	A	Q	A	S	I	A	F	L	K	T	A	E	.	G	Q	K	L	R	D	A	Q	Q
Template Known Secondary structure							T		G	G	G		S											S																								T	S	B																		T	S			.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.										.	400
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.
Query Sequence		R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	F	.	.	.	.	.	.	.	.	.	E	A
Query Conservation																																																																							.	.	.	.	.	.	.	.	.
Alig confidence																			.													.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation																			.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	H	A	K	V	L	K	M	R	L	K	A	L	G	M	P	I	.	I	D	H	G	S	H	I	V	P	V	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	P	V	H	T	K	A	V	S	D	M	L	L	S	D	Y	G	V	Y	V	Q	P	I	N	F	P	T	V	P	R	G	T	E	R	L	R
Template Known Secondary structure															T			B	.				S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.																										T	T	T	S		T	T
Template Predicted Secondary structure																			.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.														.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	P	S	P	V	H	D	L	K	Q	I	D	G	L	V	H	A	M	D	L	L	W
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions