Job Description P23893 Confidence 99.92% Date Thu Jan 5 11:40:26 GMT 2012 Rank 132 Aligned Residues 343 % Identity 14% Template c3t18D_ PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. Resolution 2.86 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																				.	.																																						.	.	.	.	.	.
Query SS confidence																				.	.																																						.	.	.	.	.	.
Query Sequence		G	K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	.	.	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	.	.	.	.	.	.	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M
Query Conservation																				.	.																																						.	.	.	.	.	.
Alig confidence																				.	.																																						.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	A	V	I	N	A	A	L	G	T	L	L	D	D	K	G	K	I	I	A	L	P	S	V	Y	D	R	L	D	E	X	D	R	S	H	I	A	S	Y	A	P	I	E	G	E	K	D	Y	R	K	I	V	I	D	T	L	F	G	P	Y	K	P	E	G	Y	I	S	A	I	A	T	P	G	G	T	G	A	I	R
Template Known Secondary structure		G	G	G						S				B		T	T	S		B												T	S		G	G	G	T	S	S				T	T															G	G	G			S	S								S
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	.	.	Y	P	Q	E	I
Query Conservation																																																																											.	.
Alig confidence								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	I	F	S	Y	.	.	L	D	E	G	D	P	L	I	C	H	D	Y	Y	W	A	P	Y	R	K	I	C	E	E	F	G	R	N	F	K	T	F	E	F	F	T	D	D	F	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	D	V	Y	K	E	A	I	D	E	G	I	R	D	S	D	R
Template Known Secondary structure							T	.	.	S		S	S							S	S			T										T									B		S	S	S	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S		S
Template Predicted Secondary structure								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.															.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.										.	.	.	260	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Query Sequence		A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	.	.	.	.	.	.	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	.	.	.	.	.	.	.	.	.	V	P	D	L	T	C	L
Query Conservation																																	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	S	L	I	N	S	P	G	N	N	P	T	G	Y	S	L	S	D	E	E	W	D	E	V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	F	A	G	D	G	D	Q	Q	R	K	F	F	E	K	F	S	N	L	P	R	N	L	F	V	V	V	A	F	S	X
Template Known Secondary structure									S	S		T	T	T														T	T	T	T	T	T	T	T	S	T	T										T	T		T	T	S	S	S	S	S	S	S	S	T	T	T	G	G	G	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		264	.	.	.	.		.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure							.											.	.	.																																								.	.	.	.
Query SS confidence							.											.	.	.																																								.	.	.	.
Query Sequence		G	K	I	I	G	.	G	G	M	P	V	G	A	F	G	G	.	.	.	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	.	.	.	.	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L
Query Conservation							.											.	.	.																																								.	.	.	.
Alig confidence							.											.	.	.																																								.	.	.	.
Template Conservation
Template Sequence		S	K	S	H	T	A	Y	G	L	R	S	G	A	A	V	G	I	S	S	S	K	E	I	I	E	E	F	E	A	S	L	A	H	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	E	N	K	K	I	Y	E	Q	E	L	V	D	L	R	N	X	L	K	S	R	A	D	V	F
Template Known Secondary structure						T		G	G	G										S																				T	S	S							T	T	T	S	S	T	T	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		L	E	A	A	E	E	A	G	I	P	L	V	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	F	E	A	G	F	M	S	V	A	.	H	S	M	E	D	I	N	N
Query Conservation																																																																									.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.											.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		V	T	A	A	K	E	N	K	L	T	X	I	P	Y	F	G	G	F	F	T	F	I	P	T	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	D	I	V	K	D	L	E	K	E	N	I	F	T	I	P	.	S	A	K	G	I	R	V	A	I	C	G	V	G	E	E	K	I	P	K
Template Known Secondary structure									T								S	S	S							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T						.		S	S						S	T	T	S		T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.																		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	D	A	A	R	R	V	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	Q	R	L	A	F	Y	T	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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