Job Description P23893 Confidence 99.93% Date Thu Jan 5 11:40:26 GMT 2012 Rank 116 Aligned Residues 345 % Identity 11% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		48	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																.	.																																						.	.	.	.	.	.
Query SS confidence						.																.	.																																						.	.	.	.	.	.
Query Sequence		D	G	K	A	.	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	.	.	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	.	.	.	.	.	.	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A
Query Conservation						.																.	.																																						.	.	.	.	.	.
Alig confidence						.																.	.																																						.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G
Template Known Secondary structure				G	G	G						S	S			B		T	T	S		B												T								S				T	T															G	G	G			S	S								S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	.	.	P	Q
Query Conservation																																																																														.	.
Alig confidence										.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation										.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	H	H	L	I	H	N	Y	.	.	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q
Template Known Secondary structure										.	.	S		T	T							S	S			T									T	T								S	B		T	T	S	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.															160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.										.	.	.	260	.
Predicted Secondary structure																																		.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Query Sequence		E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	.	.	.	.	.	.	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	.	.	.	.	.	.	.	.	.	V	P	D	L	T
Query Conservation																																		.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y
Template Known Secondary structure		S									S	S		T	T	T																						T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		262	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure									.											.	.	.																																								.	.	.	.	.
Query SS confidence									.											.	.	.																																								.	.	.	.	.
Query Sequence		C	L	G	K	I	I	G	.	G	G	M	P	V	G	A	F	G	G	.	.	.	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	.	.	.	.	.	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A
Query Conservation									.											.	.	.																																								.	.	.	.	.
Alig confidence									.											.	.	.																																								.	.	.	.	.
Template Conservation
Template Sequence		S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A
Template Known Secondary structure			S	T	T	T	T	T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	F	E	A	G	F	M	S	V	A	.	H	S	M	E	D
Query Conservation																																																																												.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.							.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		D	I	F	K	Q	E	A	A	Q	V	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	L	A	N	G	.	I	R	I	A	A	C	G	I	P	K	C	Q
Template Known Secondary structure												T								S	S	S							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T							S	S		.					G	G	G	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.																		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	N	T	I	D	A	A	R	R	V	F	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	T	G	L	A	E	K	I	Y	N	A	X	K	S	L
Template Known Secondary structure			T	T												T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions