Phyre 2 alignment of P23893 with c3pj0D

Job Description P23893
Confidence 100.00% Date Thu Jan 5 11:40:26 GMT 2012

Rank 43 Aligned Residues 325

% Identity 14% Template c3pj0D_

PDB info PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	.	.	.	.	.	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K
Query Conservation																				.	.	.	.	.
Alig confidence					.															.	.	.	.	.																								.
Template Conservation					.																																											.
Template Sequence	L	G	G	N	.	G	P	R	N	V	G	V	L	T	E	A	L	Q	N	I	D	D	N	L	E	S	D	I	Y	G	N	G	A	V	I	E	D	F	E	T	K	I	A	K	I	L	G	.	K	Q	S	A	V	F	F	P	S	G	T	X	A	Q	Q	I	A	L	R	I	W	A	D	R	K	E	N	R	R	V	A	Y
Template Known Secondary structure	S	S	B	S	.	S			S								T	T	T	S		T	T					B	T	T	B	S															T	.		S						S																		T
Template Predicted Secondary structure					.																																											.
Template SS confidence
	16	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.

	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	H	P	L	S	H	L	E	I	H	E	Q	D	G	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	Q	Q	I	T	P	L	L	L	G	T	A	N	Q	L	L	T	I	D	D	I	K	S	L	R	E	P	V	S	S	V	L	I	E	L	P	Q	R	E	I	G	G	Q	L	P	A	F
Template Known Secondary structure		T	T						S	S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S		T	T	S									T		S	S			S						S	S	B	G	G	G	T	S	B
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	94	.	.	.	.	.	100	.	.	.	.	.	.	.	.																		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	.	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G
Query Conservation																											.
Alig confidence																											.																																														.	.	.
Template Conservation																																																																									.	.	.
Template Sequence	E	E	L	E	K	I	S	E	Y	C	H	E	Q	G	I	S	L	H	L	D	G	A	R	L	W	E	I	T	P	F	Y	Q	K	S	A	E	E	I	C	A	L	F	D	S	V	Y	V	S	F	Y	G	I	G	G	I	A	G	A	I	L	A	G	N	D	D	F	V	Q	E	A	K	I	.	.	.	W	K	R	R	Y
Template Known Secondary structure														T								T	T		G	G	G					T								T	T		S												S	S																	.	.	.					T
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	G	D	L	I	S	L	Y	P	Y	I	L	S	A	D	Y	Y	F	E	K	R	I	G	K	X	A	E	Y	F	E	A	A	K	G	L	A	E	R	F	N	S	C	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	T	V	P	E	V	P	V	S	N	X	F	H	V	Y	F	E	N	S	A	D
Template Known Secondary structure	T				S																	G	G	G																	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S		S	S	S							S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.															.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.							.	.	.	400	.	.	.	.	.	.						.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.											.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.											.	.	.	.	.
Query Sequence	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	.	.	.	.	.	.	A	F	E	A	G	F	M	S	V	A	.	.	.	.	.	H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F
Query Conservation																					.	.	.	.	.	.											.	.	.	.	.
Alig confidence																					.	.	.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence	E	I	G	A	I	L	T	K	I	Q	D	E	T	G	V	G	I	S	G	Y	L	Q	E	K	S	A	D	V	C	A	F	E	V	S	V	G	D	A	F	A	E	I	P	A	K	N	L	E	L	V	F	R	C	L	E	K	E	L
Template Known Secondary structure																			S							T	T								B		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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