Job Description P23893 Confidence 99.94% Date Thu Jan 5 11:40:26 GMT 2012 Rank 94 Aligned Residues 346 % Identity 16% Template c3nraA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution Resolution 2.15 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																							.																								.	.	.	.	.	.	.	.
Query SS confidence																																							.																								.	.	.	.	.	.	.	.
Query Sequence		D	V	D	G	K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	.	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	T	.	.	.	.	.	.	.	.	M	D	M	V	R	M	V	N	S	G	T
Query Conservation																																							.																								.	.	.	.	.	.	.	.
Alig confidence															.	.																							.																								.	.	.	.	.	.	.	.
Template Conservation															.	.
Template Sequence		A	P	I	E	G	R	P	V	D	F	S	H	G	.	.	D	V	D	A	H	E	P	T	P	G	A	F	D	L	F	S	A	G	V	Q	S	G	G	V	Q	A	Y	T	E	Y	R	G	D	L	G	I	R	D	L	L	A	P	R	L	A	A	F	T	G	A	P	V	D	A	R	D	G	L	I	I	T	P	G	T	Q
Template Known Secondary structure						S					T	T	S		.	.		T	T	T	S				T	T												T					S			T	T																		T	S				T	T	T	S					S
Template Predicted Secondary structure															.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q
Query Conservation
Alig confidence											.	.																		.																														.	.	.	.	.	.	.	.											.	.	.
Template Conservation											.	.																		.																														.	.	.	.	.	.	.	.											.	.	.
Template Sequence		G	A	L	F	L	A	V	A	A	.	.	T	V	A	R	G	D	K	V	A	I	V	Q	P	D	Y	F	A	.	N	R	K	L	V	E	F	F	E	G	E	X	V	P	V	Q	L	D	Y	V	S	A	D	E	T	R	A	G	L	.	.	.	.	.	.	.	.	D	L	T	G	L	E	E	A	F	K	.	.	.	A
Template Known Secondary structure										T	.	.	T			T	T								S			T		.								T	T								B				S	S			S	S			B	.	.	.	.	.	.	.	.											.	.	.	T
Template Predicted Secondary structure											.	.																		.																														.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.									.	.	.	170	.	.	.	.	.	.				.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.							260	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																																	.	.	.	.	.	.										.
Query SS confidence																																																																	.	.	.	.	.	.										.
Query Sequence		E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	.	.	.	.	.	.	L	T	C	L	G	K	I	I	G	.	G
Query Conservation																																																																	.	.	.	.	.	.										.
Alig confidence											.																																																						.	.	.	.	.	.										.
Template Conservation											.
Template Sequence		G	A	R	V	F	L	F	S	N	.	P	N	N	P	A	G	V	V	Y	S	A	E	E	I	G	Q	I	A	A	L	A	A	R	Y	G	A	T	V	I	A	D	Q	L	Y	S	R	L	R	Y	A	G	A	S	Y	T	H	L	R	A	E	A	A	V	D	A	E	N	V	V	T	I	X	G	P	S	T	E	S	L	S
Template Known Secondary structure		T								S	.	S		T	T	T																				T								T	T	T	T	S	B		T	T						G	G	G		T	T	S		G	G	G													G
Template Predicted Secondary structure											.
Template SS confidence
		178	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	N
Query Conservation
Alig confidence																					.	.	.																									.	.
Template Conservation																					.	.	.																									.	.
Template Sequence		G	Y	R	L	G	V	A	F	G	S	R	A	I	I	A	R	X	E	K	.	.	.	L	Q	A	I	V	S	L	R	A	A	G	Y	S	Q	A	V	L	R	G	W	F	D	E	A	.	.	P	G	W	X	E	D	R	I	A	R	H	Q	A	I	R	D	E	L	L	H	V	L	R	G	E	G	V	F	A	R	T	P
Template Known Secondary structure		G	G																		.	.	.						T	S	S	S						G	G	G	G	G	T	T				.	.	T	T																										B
Template Predicted Secondary structure																					.	.	.																									.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.							.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.
Query Sequence		H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	.	.	.	.	.	.	A	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F
Query Conservation																																																	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	G	S	Y	L	F	P	R	L	P	K	L	A	V	A	P	.	.	.	.	.	.	.	.	.	.	.	.	A	E	F	V	K	I	L	R	L	Q	A	G	V	V	V	T	P	G	T	E	F	S	P	H	T	A	D	S	V	R	L	N	F	S	Q	D	H	E	A	A	V	A	A	A	R	R	I	V	T	L	V
Template Known Secondary structure		S	B	S	S					B				B	S	S			.	.	.	.	.	.	.	.	.	.	.	.																		G	G	G	T		T	T		T	T	B							S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350													.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		424	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		402	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions