Job Description P23893 Confidence 99.88% Date Thu Jan 5 11:40:26 GMT 2012 Rank 167 Aligned Residues 327 % Identity 13% Template c3mc6C_ PDB info PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1 Resolution 3.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90									.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																								.	.	.	.	.	.	.	.															.	.	.
Query SS confidence							.	.	.																								.	.	.	.	.	.	.	.															.	.	.
Query Sequence		V	L	G	H	N	.	.	.	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	E	.	.	.	.	.	.	.	.	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	.	.	.	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A	I	R	L	A	R	G
Query Conservation							.	.	.																								.	.	.	.	.	.	.	.															.	.	.
Alig confidence							.	.	.																								.	.	.	.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		V	S	G	A	V	Y	H	G	G	D	D	L	I	H	L	Q	T	I	A	Y	E	K	Y	C	V	A	N	Q	L	H	P	D	V	F	P	A	V	R	K	M	E	S	E	V	V	S	M	V	L	R	M	F	N	A	P	S	D	T	G	C	G	T	T	T	S	G	G	T	E	S	L	L	L	A	C	L	S	A	K	M
Template Known Secondary structure		B	S	S	S		S																	T	S	S		B	T	T		T	T	T																			T	T			T	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		129	130							.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		F	T	.	.	.	.	.	.	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.												.																												.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																					.																												.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		Y	A	L	H	H	R	G	I	T	E	P	E	I	I	A	P	V	T	A	.	H	A	G	F	D	K	A	A	Y	Y	F	G	M	K	L	R	H	V	E	L	D	P	T	T	Y	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	G	K	V	K	K	F	I	N	.	.	.	K	N	T	V	L	L	V
Template Known Secondary structure							S			S	S							T	T	S	.											S									B		T	T	T		S	B	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T	G	G	G			.	.	.	S	S
Template Predicted Secondary structure																					.																												.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.														.	.	.	.	.	300	.	.	.	.				.	.	.	.	.	310	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.											.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	.	.	.	.	.	.	.	.	.	.	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P
Query Conservation																																														.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		G	S	A	P	N	F	P	H	G	I	A	D	D	.	.	.	.	I	E	G	L	G	K	I	A	Q	K	Y	K	L	P	L	H	V	D	S	C	L	G	S	F	I	V	S	F	M	E	K	A	G	Y	K	N	L	P	L	L	D	F	R	V	P	G	V	T	S	I	S	C	D	T	H	K	Y	G	F	A	P	K	G
Template Known Secondary structure				T	T		T	T	T					S	.	.	.	.		T	T	T	T	T					T	T							T	T	T	T					G	G	G	T	T	T	T			S					S	T	T	S	T	T								T	T	T	T	T				S	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.					.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.									.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.
Query Sequence		V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	.	.	.	.	.	.	.	.	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I
Query Conservation																					.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	V	I	M	Y	R	N	S	D	L	R	M	H	Q	Y	Y	V	N	P	A	W	T	G	G	L	Y	G	S	P	T	L	A	G	S	R	P	G	A	I	V	V	G	C	W	A	T	M	V	N	M	G	E	N	G	Y	I	E	S	C	Q	E	I	V	G	A	A	M	K	F	K	K	Y	I	Q	E	N	I	P	D
Template Known Secondary structure								S	S					T	T	T	S			B	T	T		T	T	S		B			S	S	S		S	S		B																																								S		T	T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		345	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure						.																																																	.	.	.
Query SS confidence						.																																																	.	.	.
Query Sequence		P	L	V	V	.	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	.	.	.	A	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D	A	A	R
Query Conservation						.																																																	.	.	.
Alig confidence						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.													.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		L	D	I	M	G	N	P	R	Y	S	V	I	S	F	S	S	K	T	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	H	E	L	S	D	R	L	S	K	K	G	W	H	F	N	A	L	Q	K	P	V	A	L	H	M	A	F	T	R	L	S	A	.	H	V	V	D	E	I	C	D	I	L	R
Template Known Secondary structure						S				S	S							T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T		B						S	S									T	T	T	T	.		T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.																.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520		.	.	.	.	.	.	.	.	.	530	.
		421	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	F	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	V	Q	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions