Job Description P23893 Confidence 99.70% Date Thu Jan 5 11:40:26 GMT 2012 Rank 225 Aligned Residues 324 % Identity 11% Template c3m5uA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni Resolution 2.15 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.												90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	.	.	.	.	.	.	.	.	.	.	.	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	.	.	T	M	D	M	V	R	M	V	N	S	G	T
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence											.	.					.	.	.																							.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation											.	.					.	.	.
Template Sequence		X	R	K	I	N	F	S	A	G	.	.	P	S	T	L	.	.	.	P	L	E	I	L	E	Q	A	Q	K	E	L	C	D	Y	Q	G	R	G	Y	S	I	X	E	I	S	H	R	T	K	V	F	E	E	V	H	F	G	A	Q	E	K	A	K	K	L	Y	E	L	N	D	D	Y	E	V	L	F	L	Q	G	G	A
Template Known Secondary structure									S	S	.	.	S				.	.	.											T	S	S	S	G	G	G	S	S	S		G	G	G	S		S	S	S																			T			T	T							S	S
Template Predicted Secondary structure											.	.					.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.			10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q
Query Conservation
Alig confidence														.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	Q	F	A	X	I	P	X	N	L	A	.	.	L	N	G	V	C	E	Y	A	N	T	G	V	W	T	K	K	A	I	K	E	A	Q	I	L	G	V	N	V	K	T	V	A	S	S	E	E	S	N	F	D	H	I	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	F	S	D
Template Known Secondary structure														.	.		S	S								S													T	T										T	T	T	T	S		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T
Template Predicted Secondary structure														.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																		.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P	V	G	A	F
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.																										.	.	.	.									.
Template Conservation																					.	.	.	.	.	.	.	.	.	.																										.	.	.	.									.
Template Sequence		N	A	D	Y	A	Y	I	C	S	N	N	T	I	Y	G	T	Q	Y	Q	.	.	.	.	.	.	.	.	.	.	N	Y	P	K	T	K	T	P	L	I	V	D	A	S	S	D	F	F	S	R	K	V	D	F	S	.	.	.	.	N	I	A	L	F	Y	G	G	.	V	Q	K	N	A	G	I	S	G	L	S	C	I
Template Known Secondary structure		T	S	S						S			T	T	T	T				S	.	.	.	.	.	.	.	.	.	.	S					S	S							G	G	G	T	T	S	S					T	.	.	.	.	T								.	T	T	T	T	S	S		T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.																										.	.	.	.									.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.											.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.											.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Query Sequence		G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	.	.	.	.	.	.	.	.	.	.	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Template Conservation
Template Sequence		F	I	R	K	D	X	L	E	R	S	K	N	K	Q	I	P	S	X	L	N	Y	L	T	H	A	E	N	Q	S	L	F	N	T	P	P	T	F	A	I	Y	X	F	N	L	E	X	D	W	L	L	N	Q	G	G	L	D	K	V	H	E	K	N	S	Q	K	A	T	X	L	Y	E	C	I	D	L	S	N	G	F	Y
Template Known Secondary structure													T					G	G	G								T	T	T		S	S																			T	T	T																						T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
				344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.					.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																						.	.	.	.
Query SS confidence		.	.																																																						.	.	.	.
Query Sequence		.	.	I	P	L	V	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	.	.	.	.	A	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D
Query Conservation		.	.																																																						.	.	.	.
Alig confidence		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	H	A	D	K	K	D	R	S	L	X	N	V	S	F	N	I	A	K	N	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	P	L	F	V	K	E	A	E	E	A	G	X	I	G	L	K	G	H	R	I	L	G	G	I	R	A	S	I	Y	N	A	L	N	L	D	Q	V	K	T	L	C	E
Template Known Secondary structure				S	S		G	G	G	B		S	S							S	S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T					B			T	T	T		S							T	T	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.														.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		418	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	R	R	V	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	X	K	E	F	Q	G	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions