Job Description P23893 Confidence 99.93% Date Thu Jan 5 11:40:26 GMT 2012 Rank 112 Aligned Residues 336 % Identity 12% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.										.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																		.	.																		.																			.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.																		.																			.	.	.	.	.	.	.	.	.
Query Sequence		I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	.	.	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	.	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	.	.	.	.	.	.	.	.	.	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M
Query Conservation																		.	.																		.																			.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																		.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	N	L	S	I	G	V	C	C	N	D	D	G	D	L	H	I	F	D	S	V	L	N	A	D	K	L	V	T	E	N	Y	K	E	K	P	Y	L	L	G	N	G	T	E	D	F	S	T	L	T	Q	N	L	I	F	G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F
Template Known Secondary structure					S		S	S		B		T	T	S	S	B																								T	T	S	S															S	S		T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C
Query Conservation
Alig confidence													.											.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.											.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	L	E	F	L	K	M	L	N	V	.	E	T	L	Y	V	T	N	P	P	Y	.	I	N	H	V	N	M	I	E	S	R	G	F	N	L	K	Y	I	N	F	F	D	Y	N	L	I	D	I	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	D	L	F	L	N	D	L	R	N	I	P	N	G	S	S	V
Template Known Secondary structure									T	T	T		.							S	S			.									T	T	T											T	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.												S		S	S
Template Predicted Secondary structure													.											.																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.													160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.									.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.																					.
Query SS confidence																																																		.	.	.	.	.	.	.	.																					.
Query Sequence		I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	.	.	.	.	.	.	.	.	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	.	G	G	M
Query Conservation																																																		.	.	.	.	.	.	.	.																					.
Alig confidence							.																																											.	.	.	.	.	.	.	.																					.
Template Conservation							.
Template Sequence		I	L	Q	I	S	.	C	Y	N	P	C	S	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V	C	Q	S	F	S	K	N	M	S	L	Y	G	E
Template Known Secondary structure						S	.	S		T	T	T																												S		T	T	T	S	S	S	S	T	T	G	G	G								T	T	T										T	T	T	S			T	T	T
Template Predicted Secondary structure							.
Template SS confidence
		178	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		272	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.										.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																																				.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.																																				.	.	.	.	.	.	.	.	.
Query Sequence		P	V	G	A	F	G	G	.	.	.	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	.	.	.	.	.	.	.	.	.	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A
Query Conservation									.	.	.																																				.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	G	A	L	H	I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R	I	T	N	N	R	I	L	F	F	N	K	L	E	T	Y	Q
Template Known Secondary structure		T									S	S																	T	T	T	S	S																																																G
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		340	.	.	.	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.
Predicted Secondary structure										.	.	.	.																																																												.
Query SS confidence										.	.	.	.																																																												.
Query Sequence		E	E	A	G	I	P	L	V	.	.	.	.	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	F	E	A	G	F	M	S	V	A	.	H	S	M	E	D	I	N	N
Query Conservation										.	.	.	.																																																												.
Alig confidence										.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.						.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Sequence		K	K	Y	N	L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	A	E	H	L	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	.	R	I	N	V	S	G	I	T	K	N	N	V	D	Y
Template Known Secondary structure		G	G	G	T					G	G	G	G	S	S			S	S					G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T	T	T	T	T	T	T					T	T	S	.	.	.	.				G	G	G			T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.																				.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.	.	390	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	D	A	A	R	R	V	F	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	D	K	I	C	L	S	L	S	Q	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions