Job Description P23893 Confidence 100.00% Date Thu Jan 5 11:40:26 GMT 2012 Rank 42 Aligned Residues 338 % Identity 16% Template c3hqtB_ PDB info PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa Resolution 2.70 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.
Query Sequence		V	G	G	T	P	L	F	I	E	K	A	D	G	A	Y	L	Y	D	V	D	G	K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	.	.	.	.	.	.	.	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E
Query Conservation																																																											.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	G	K	H	L	V	L	G	K	Q	A	S	P	D	D	I	I	L	Q	S	N	D	Y	L	A	L	A	N	.	.	.	.	.	.	.	.	.	.	H	P	L	I	K	A	R	L	A	K	S	L	L	E	E	Q	Q	S	L	F	M	S	A	S	F	L	Q	N	D	Y	D	K	P	M	I	E	K	R	L	A	K
Template Known Secondary structure		T	T	S	S		T	T			S				T	T	S								T	T			T	T	.	.	.	.	.	.	.	.	.	.														S							S	B	G	G	G	G		S	T	T	T	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.											.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y
Query Conservation
Alig confidence				.																							.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																							.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	.	G	F	D	E	C	L	L	S	Q	S	G	W	N	A	N	V	G	L	L	Q	T	I	.	.	.	C	Q	P	N	T	N	V	Y	I	D	F	F	A	H	M	S	L	W	E	G	A	R	Y	A	N	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	P	F	M	H
Template Known Secondary structure				.	T		S						S														.	.	.			T	T							T	T	S											T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T
Template Predicted Secondary structure				.																							.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																				.	.	.	150	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	.	.	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D
Query Conservation																																																																.	.
Alig confidence															.	.																				.	.	.	.																									.	.
Template Conservation															.	.																				.	.	.	.
Template Sequence		N	N	C	D	H	L	R	M	L	I	Q	R	H	.	.	G	P	G	I	I	V	V	D	S	I	Y	S	T	L	G	T	I	A	P	.	.	.	.	L	A	E	L	V	N	I	S	K	E	F	G	C	A	L	L	V	D	E	S	H	S	L	G	T	H	G	P	N	G	A	G	L	L	A	E	L	G	L	T	R	E
Template Known Secondary structure		T													.	.		S							S	B		T	T	T			B			.	.	.	.											T	T								T	T	T	B	T	T	B	S	G	G	G							T	T		G	G	G
Template Predicted Secondary structure															.	.																				.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	T	C	L	G	K	I	I	G	G	G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		V	H	F	M	T	A	S	L	A	K	T	F	A	Y	R	A	G	A	I	W	C	N	N	E	V	N	R	C	V	P	F	I	S	Y	P	A	I	F	S	S	T	L	L	P	Y	E	A	A	G	L	E	T	T	L	E	I	I	E	S	A	D	N	R	R	Q	H	L	D	R	M	A	R	K	L	R	I	G	L	S	Q
Template Known Secondary structure			S						S	S	S	T	T		S	S							S	S	S	G	G	G	T											S	B																				T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.										.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.
Query Sequence		A	A	E	E	A	G	I	P	L	V	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	F	.	.	.	.	.	.	.	.	.	E	A	G	F	M	S	V	A	H	S
Query Conservation																																																															.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	G	L	T	I	R	S	E	S	Q	I	I	G	L	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	E	R	N	T	E	K	V	R	D	Y	L	E	S	N	G	V	F	G	S	V	F	C	R	P	A	T	S	K	N	K	N	I	I	R	L	S	L	N	S	D	V	N
Template Known Secondary structure		T	.	.	.	.	.	.	T							S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.		S														T	T								T	T	S	S		T	T										T	T
Template Predicted Secondary structure			.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		307							.	.	310	.	.	.	.	.	.	.	.	.	320	.	.															.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	D	I	N	N	T	I	D	A	A	R	R	V	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	Q	I	A	K	I	I	E	V	C	S	D	A	V	N	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions