Job Description P23893 Confidence 99.85% Date Thu Jan 5 11:40:26 GMT 2012 Rank 187 Aligned Residues 342 % Identity 12% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.							110	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.												.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.												.	.	.	.	.	.
Query Sequence		D	G	K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	.	.	.	.	V	T	E	L	V	P	T	M	D	M	V	.	.	.	.	.	.	R	M	V	N	S	G	T	E
Query Conservation																																																					.	.	.	.												.	.	.	.	.	.
Alig confidence													.	.	.	.																																					.	.	.	.												.	.	.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		D	G	N	P	R	L	N	L	A	S	F	.	.	.	.	V	T	T	W	M	E	P	E	C	D	K	L	I	M	S	S	I	N	K	N	Y	V	D	M	D	E	Y	P	V	T	T	E	L	Q	N	R	C	V	N	M	I	A	H	L	F	N	A	P	L	E	E	A	E	T	A	V	G	V	G	T	V	G	S	S	E
Template Known Secondary structure		S			G	G	G	B	T	T			.	.	.	.	S															T	T	T		B	T	T		T	T	T																			T	T					T	T									S	S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.											.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	M	S	A	I	R	L	A	R	G	.	.	.	.	.	.	.	.	.	.	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V
Query Conservation													.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	M	L	A	G	L	A	F	K	R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	W	E	K	F	A	R	Y	F	E	V	E	L	K	E	V	K	L	S	E	G	Y	Y	V	M	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	Q	Q	A
Template Known Secondary structure																					T	T				S								T	T												T	T									B	T	T	B		S		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190														.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.																.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.																.	.	.	.	.
Query Sequence		R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	.	.	.	.	.	.	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	.	.	.	.	.	A	L	A	G	A	Q	D	Y	Y	G	V
Query Conservation																																													.	.	.	.	.	.																.	.	.	.	.
Alig confidence							.	.	.																					.	.	.	.												.	.	.	.	.	.																.	.	.	.	.
Template Conservation							.	.	.																					.	.	.	.
Template Sequence		V	D	M	V	D	.	.	.	E	N	T	I	C	V	A	A	I	L	G	S	T	L	N	G	E	F	E	D	.	.	.	.	V	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A	A	S	G	G	F	I	A	P	F	L	Y	P	E	L	E	W	D	F	R	L	P	L	V
Template Known Secondary structure							.	.	.	T	T								B	S		T	T	T			B			.	.	.	.																										T	T	G	G	G	T						S	S				S	T	T	S	T	T
Template Predicted Secondary structure							.	.	.																					.	.	.	.
Template SS confidence
		196	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.								.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.
Query Sequence		V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	.	.	.	.	.	.	.	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T
Query Conservation																																										.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	I	N	V	S	G	H	Y	G	L	V	Y	A	G	I	G	W	V	I	W	R	N	K	E	D	L	P	E	E	L	I	F	H	I	N	Y	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I	A	Q	Y	Y	Q	L	I	R	L	G	H	E	G	Y	R	N	V	M	E	N	C	R	E
Template Known Secondary structure															S	S							S	S	G	G	G	S		G	G	G						S	S	S	S							S			S		B	S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.										.
Predicted Secondary structure																					.	.																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.																																																		.	.	.	.	.	.	.	.	.
Query Sequence		R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	.	.	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	.	.	.	.	.	.	.	.	.	F
Query Conservation																					.	.																																																		.	.	.	.	.	.	.	.	.
Alig confidence		.																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation		.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	N	M	I	V	L	R	E	G	L	E	K	T	E	R	F	N	I	V	S	K	D	E	G	V	P	L	V	A	F	S	L	K	D	S	S	C	H	T	.	.	.	.	.	.	.	.	.	.	.	.	E	F	E	I	S	D	M	L	R	R	Y	G	W	I	V	P	A	Y	T	M	P	P	N	A	Q	H	I	T	V
Template Known Secondary structure		.											T	T	T						S		S	S	S	S	S							S	S		S	S			.	.	.	.	.	.	.	.	.	.	.	.										T	T	T		B								T	T		T	T
Template Predicted Secondary structure		.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.													.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	V	V	I	R	E	D	F	S	R	T	L	A	E	R	L	V	I	D	I	E	K	V	M	R	E	L
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions