Job Description P23893 Confidence 99.87% Date Thu Jan 5 11:40:26 GMT 2012 Rank 176 Aligned Residues 324 % Identity 13% Template c3ffrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution Resolution 1.75 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																									.	.	.	.	.																				.	.
Query SS confidence																																									.	.	.	.	.																				.	.
Query Sequence		K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	.	.	.	.	.	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	T	M	D	.	.	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A
Query Conservation																																									.	.	.	.	.																				.	.
Alig confidence											.	.					.	.	.																						.	.	.	.	.																				.	.
Template Conservation											.	.					.	.	.
Template Sequence		N	N	K	I	Y	F	T	P	G	.	.	P	S	E	L	.	.	.	Y	P	T	V	R	Q	H	X	I	T	A	L	D	E	K	I	G	V	I	S	H	R	S	K	K	F	E	E	V	Y	K	T	A	S	D	N	L	K	T	L	L	E	L	P	S	N	Y	E	V	L	F	L	A	S	A	T	E	I	W	E	R	I
Template Known Secondary structure									S	S	.	.	S				.	.	.		T	T											T	T	T	T	T	S		T	T	S																		T	T			T	T							S
Template Predicted Secondary structure											.	.					.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10			.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I
Query Conservation
Alig confidence						.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Q	N	C	.	.	.	V	E	K	K	S	F	H	C	V	N	G	S	F	S	K	R	F	Y	E	F	A	G	E	L	G	R	E	A	Y	K	E	E	A	A	F	G	K	G	F	Y	P	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	V	P	A	D	A	E	I	I	C
Template Known Secondary structure						.	.	.		S	S								S													T	T										T	T					G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure						.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																				.	.	.	.	.	.	130	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P	V	G	A	F	G	G	R	R	D	V
Query Conservation
Alig confidence															.	.	.	.																															.	.	.	.
Template Conservation															.	.	.	.																															.	.	.	.
Template Sequence		L	T	H	N	E	T	S	S	G	V	S	X	P	.	.	.	.	V	E	D	I	N	T	F	R	D	K	N	K	D	A	L	I	F	V	D	A	V	S	S	L	P	Y	P	K	F	D	.	.	.	.	W	T	K	I	D	S	V	F	F	S	V	Q	C	F	G	L	P	A	G	L	G	V	W	I	L	N	D	R	V
Template Known Secondary structure				S			T	T	T	T					.	.	.	.					T	T	S	G	G	G	S	T	T	S							T	T	T	T	T	S	S				.	.	.	.	T	T	S		S													S
Template Predicted Secondary structure															.	.	.	.																															.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		283	.	.	.	.																						.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	K	S	K	A	L	L	A	K	R	K	S	I	G	T	Y	H	T	I	P	S	X	L	E	K	A	R	V	N	Q	T	P	E	T	P	N	A	X	N	I	F	L	L	G	K	V	T	G	D	X	L	Q	I	S	A	D	G	I	R	K	Q	T	E	E	K	A	A	L	I	N	T	Y	I	E	S	S	K	V	F
Template Known Secondary structure											T	T					S	T	T	S									T	T	T			S	S																																												S	S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.							.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		A	G	I	P	L	V	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	.	.	.	.	.	.	A	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T
Query Conservation																																																									.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	G	V	E	D	A	K	L	R	S	X	T	T	I	V	A	N	T	T	X	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	E	I	N	K	I	L	E	P	F	D	X	A	V	G	A	G	Y	G	S	K	K	E	T	Q	I	R	I	A	N	F	P	A	H	S	L	E	Q	V	H	K	L
Template Known Secondary structure				S	S	S		G	G	G	B		S	S							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									G	G	G	T							S	G	G	G	T	T	T								T	T	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.																310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		416	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	A	A	R	R	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	T	L	K	E	K	I
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions