Job Description P23893 Confidence 99.92% Date Thu Jan 5 11:40:26 GMT 2012 Rank 130 Aligned Residues 335 % Identity 14% Template c3eleB_ PDB info PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution Resolution 2.10 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.					.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.																			.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.																			.	.	.	.	.	.	.
Query Sequence		A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	.	.	.	.	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	.	.	.	.	.	.	.	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T
Query Conservation																																					.	.	.	.																			.	.	.	.	.	.	.
Alig confidence																.	.	.																			.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		N	V	Y	D	F	S	I	G	N	P	S	I	P	A	.	.	.	P	Q	I	V	N	D	T	I	K	E	L	V	T	D	Y	D	S	V	A	L	H	G	Y	T	S	A	Q	G	D	V	E	T	R	A	A	I	A	E	F	L	N	N	T	H	G	T	H	F	N	A	D	N	L	Y	X	T	X	G	A	A	A	S	L
Template Known Secondary structure		G											S			.	.	.															S							S				T	T																							G	G	G					S	S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A
Query Conservation
Alig confidence							.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation							.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		S	I	C	F	R	.	A	L	T	S	D	A	Y	D	E	F	I	T	I	A	P	Y	F	P	E	Y	K	V	F	V	N	A	A	G	A	R	L	V	E	V	P	A	D	T	E	H	F	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	D	A	L	E	E	R	I	N	.	.	.	A	H	T	R
Template Known Secondary structure							.					S	T	T							S	S			T	T								T	T										T	T	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.								T			.	.	.	T	T
Template Predicted Secondary structure							.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		112	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.															160	.	.	.	.	.	.	.	.	.				170	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.							.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																																		.	.	.	.	.	.													.	.	.																										.
Query SS confidence																																		.	.	.	.	.	.													.	.	.																										.
Query Sequence		C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	.	.	.	.	.	.	A	L	L	I	I	D	E	V	M	T	G	F	.	.	.	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	.	G
Query Conservation																																		.	.	.	.	.	.													.	.	.																										.
Alig confidence														.																				.	.	.	.	.	.													.	.	.																										.
Template Conservation														.
Template Sequence		G	V	I	I	N	S	P	N	N	P	S	G	.	T	V	Y	S	E	E	T	I	K	K	L	S	D	L	L	E	K	K	S	K	E	I	G	R	P	I	F	I	I	A	D	E	P	Y	R	E	I	V	Y	D	G	I	K	V	P	F	V	T	K	Y	Y	D	N	T	L	V	C	Y	S	Y	S	K	S	L	S	L	P
Template Known Secondary structure							S	S		T	T	T		.																							T	S									T	T	T	T		B		T	T						G	G	G	T		S	S							S	T	T	T	S	S		G
Template Predicted Secondary structure														.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	.	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V
Query Conservation																																																		.
Alig confidence																																																		.																						.	.	.	.
Template Conservation																																																																								.	.	.	.
Template Sequence		G	E	R	I	G	Y	V	L	V	P	D	E	V	Y	D	K	A	E	L	Y	A	A	V	C	G	A	G	R	A	L	G	Y	V	C	A	P	S	L	F	Q	K	X	I	V	K	C	Q	G	A	T	G	D	I	N	A	Y	K	E	N	R	D	L	L	Y	E	G	L	T	R	I	.	.	.	.	G	Y	H	C	F	K
Template Known Secondary structure		G	G									T	T	S	T	T															T	T				S									T	T		T	T																							.	.	.	.	T
Template Predicted Secondary structure																																																																								.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.					.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.
Query SS confidence																																																		.	.	.	.
Query Sequence		N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	.	.	.	.	A	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F	A
Query Conservation																																																		.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	G	A	F	Y	X	F	V	K	A	L	E	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	A	F	C	E	K	A	K	E	E	D	V	L	I	V	A	A	D	G	F	G	C	P	G	W	V	R	I	S	Y	C	V	D	R	E	X	I	K	H	S	X	P	A	F	E	K	I	Y	K
Template Known Secondary structure			S	B	S	S							S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T						G	G	G	G	T		T	T								S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.																.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		425	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		394	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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