Job Description P23893 Confidence 99.95% Date Thu Jan 5 11:40:26 GMT 2012 Rank 84 Aligned Residues 348 % Identity 11% Template c3eibB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana Resolution 1.85 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.										.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.																								.
Query SS confidence																																					.	.	.	.	.	.	.	.	.																								.
Query Sequence		V	D	G	K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	.	.	.	.	.	.	.	.	.	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	.	T	M	D	M	V	R	M	V	N	S	G	T
Query Conservation																																					.	.	.	.	.	.	.	.	.																								.
Alig confidence																				.	.	.															.	.	.	.	.	.	.	.	.																								.
Template Conservation																				.	.	.
Template Sequence		Y	P	D	A	Q	V	I	S	L	G	I	G	D	T	T	E	P	I	.	.	.	P	E	V	I	T	S	A	M	A	K	K	A	H	E	L	S	T	I	E	G	Y	S	G	Y	G	A	E	Q	G	A	K	P	L	R	A	A	I	A	K	T	F	Y	G	G	L	G	I	G	D	D	D	V	F	V	S	D	G	A	K
Template Known Secondary structure		S	T	T							S	S					S			.	.	.															T	T	S	T	T	T				S			T	T															T	T	T	T			G	G	G					S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q
Query Conservation
Alig confidence												.	.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.																																													.	.	.	.	.	.	.	.	.
Template Sequence		C	D	I	S	R	L	Q	V	M	F	.	.	.	G	S	N	V	T	I	A	V	Q	D	P	S	Y	P	A	Y	V	D	S	S	V	I	M	G	Q	T	G	Q	F	N	T	D	V	Q	K	Y	G	N	I	E	Y	M	R	C	.	.	.	.	.	.	.	.	.	T	P	E	N	G	F	F	P	D	L	S	T	V	G
Template Known Secondary structure												.	.	.		T	T								S			T									T	T		S					T	T	T	T			T	T							.	.	.	.	.	.	.	.	.		T	T	T	T	T				G	G	G
Template Predicted Secondary structure												.	.	.																																													.	.	.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.										.	.	.	.	.	.	190	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270
Predicted Secondary structure																																																									.	.	.	.	.																		.
Query SS confidence																																																									.	.	.	.	.																		.
Query Sequence		E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	G	A	Q	.	.	.	.	.	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	.	G	G
Query Conservation																																																									.	.	.	.	.																		.
Alig confidence											.																																														.	.	.	.	.																		.
Template Conservation											.
Template Sequence		R	T	D	I	I	F	F	C	S	.	P	N	N	P	T	G	A	A	A	T	R	E	Q	L	T	Q	L	V	E	F	A	K	K	N	G	S	I	I	V	Y	D	S	A	Y	A	M	Y	M	S	D	D	N	P	R	S	I	F	E	I	P	G	A	E	E	V	A	M	E	T	A	S	F	S	N	Y	A	G	F	T	G
Template Known Secondary structure				S						S	.	S		T	T	T																				T								T	T	G	G	G			S	S			S	S	G	G	G	S	T	T	G	G	G	T							S					S	T	T	T
Template Predicted Secondary structure											.
Template SS confidence
		198	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	.	.	.	.	.	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P
Query Conservation																				.	.	.	.	.
Alig confidence																				.	.	.	.	.																															.
Template Conservation																																																							.
Template Sequence		V	R	L	G	W	T	V	I	P	K	K	L	L	Y	S	D	G	F	P	V	A	K	D	F	N	R	I	I	C	T	C	F	N	G	A	S	N	I	S	Q	A	G	A	L	A	C	L	T	P	E	G	L	E	.	A	M	H	K	V	I	G	F	Y	K	E	N	T	N	I	I	I	D	T	F	T	S	L	G	Y	D
Template Known Secondary structure		T									T	T		B		T	T	S		B																S												S	S						.																							T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.							.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.
Query Sequence		L	V	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	.	.	.	.	.	.	A	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D	A	A
Query Conservation																																																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	G	G	K	N	A	P	Y	V	W	V	H	F	P	N	Q	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	D	V	F	A	E	I	L	E	K	T	H	V	V	T	T	P	G	S	G	F	G	P	G	G	E	G	F	V	R	V	S	A	F	G	H	R	E	N	I	L	E	A	C	R	R	F
Template Known Secondary structure						S	S	S	S							T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.																		G	G	G	G		G	G	G	T	T								S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.															.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	V	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Q	L	Y	K	H
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions