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Job DescriptionP23893
Confidence99.94%DateThu Jan 5 11:40:26 GMT 2012
Rank100Aligned Residues343
% Identity15%Templatec3cbfA_
PDB info PDB header:transferaseChain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
Resolution1.67 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   48.50.........60.........70.........80... ......90.........100.... .....110.........120...
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Query Sequence  DGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGL. . . SFGAPTEMEVKMAQLVTELVP. TMDMVRMVNSGTEATMSAI
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Template Sequence  QRPGILSFAGGLPAPEL. FPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVG
Template Known Secondary structure  TSTT
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   30.........40...... ...50.........60.........70.........80.........90.........100........
 
   124.....130.........140.........150.........160.........170.........180.........190.........200...
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Query Sequence  RLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKYTLTCTYNDLASVRAAFEQYPQEIACIIV
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Template Sequence  KVF. . LDEGSPVLLEAPSYMGAIQAFRLQG. . . . . . . . . . . . . . . . PRFLTVPAGEEGPDLDALEEVLKRERPRF. . LYL
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   109110. ........120.........130...... ...140.........150.........160..... ...
 
   204.....210.........220.........230.........240....... ..250.........260.........270.....
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Query Sequence  EPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL. . . . . . . . AGAQDYYGVVPDLTCLGKIIGGGMPVGA
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Template Sequence  IPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAF
Template Known Secondary structure 

BS
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   169170.........180.........190.........200.........210.........220.........230.........240........
 
   276...280.........290.........300.........310.........320.........330.........340.........350.....
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Query Sequence  FGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMF
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Template Sequence  AVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG. GMFV
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   249250.........260.........270.........280.........290.........300.........310.........320... ....
 
   356...360.........370.........380.........390...... ...400...... ...410.........420......
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Query Sequence  GIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPS. . . . . . . . AFEAGFMSVA. HSMEDINNTIDAARRVFAKL
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Template Sequence  WMELPKGLS. . . . . . . . . . . . . . AEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGL
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   328.330...... ...340.........350.........360.........370.........380.........390...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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