Job Description P23893 Confidence 99.89% Date Thu Jan 5 11:40:26 GMT 2012 Rank 162 Aligned Residues 317 % Identity 14% Template c3bcxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase Resolution 2.40 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A	I	R	L	.	.	.	.	.	.	.	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence																						.	.															.																						.	.	.	.	.	.	.
Template Conservation																						.	.															.
Template Sequence		G	T	K	E	L	Q	L	M	V	E	A	S	L	D	G	W	L	T	T	G	.	.	R	F	N	D	A	F	E	K	K	L	G	E	Y	L	.	G	V	P	Y	V	L	T	T	T	S	G	S	S	A	N	L	L	A	L	T	A	L	T	S	P	K	L	G	V	R	A	L	K	P	G	D	E	V	I	T	V	A	A
Template Known Secondary structure																T			B	S		.	.															.	T		S						S													T	T		G	G	G	G	G	G	S			T	T							S	S
Template Predicted Secondary structure																						.	.															.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																		.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																		.	.	.	.	.	.	.
Template Sequence		G	F	P	T	T	V	N	P	T	I	Q	N	G	L	I	P	V	F	V	D	V	D	I	P	T	Y	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	S	L	I	E	A	A	V	S	.	.	.	D	K	T	K	A	I	M	I	A	H	T	L	G	N	L	F	D	.	.	.	.	.	.	.	L
Template Known Secondary structure		S											T	T								B		T	T	T		S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G							.	.	.	S	S									G	G	G					.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																		.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.															.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.								.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.																									.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	.	.	K	I	I	G	G	G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.									.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		A	E	V	R	R	V	A	D	K	Y	N	L	W	L	I	E	D	C	C	D	A	L	G	S	T	Y	D	G	K	M	A	G	T	F	G	.	D	I	G	T	V	S	F	Y	P	A	H	H	I	T	M	G	E	G	G	A	V	F	T	Q	S	A	E	L	K	S	I	I	E	S	F	R	D	W	G	R	D	C	Y	C
Template Known Secondary structure												T								T	T		T	T				T	T			T	T	S	S	S	.	S							S	T	T	S	S	S			S	S							S													B	T	T	B
Template Predicted Secondary structure																																					.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
											289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.				.	350	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																													.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																													.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	.	.	.	N	H	V	G	G	M	F	G
Query Conservation		.	.	.	.	.	.	.	.	.																																																													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																													.	.	.
Template Conservation
Template Sequence		L	G	S	L	P	F	G	Y	D	H	K	Y	T	Y	S	H	L	G	Y	N	L	K	I	T	D	M	Q	A	A	C	G	L	A	Q	L	E	R	I	E	E	F	V	E	K	R	K	A	N	F	K	Y	L	K	D	A	L	Q	S	C	A	D	F	I	E	L	P	E	A	T	E	N	S	D	P	S	W	F	G	F	P
Template Known Secondary structure							T	T			G	G	G		B		S				B				B																																G	G	G	G	T	T	T								T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.																															.	400	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	G	F	M	S	V	A
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	L	K	E	D	S	G	V	S	.	.	.	.	.	.	.	.	.	.	.	.	R	I	D	L	V	K	F	L	D	E	A	K	V	G	T	R	L	L	F	A	G	N	L	T	R	Q	P	Y	F	H	D	V	K	Y	R	V	V	G	E	L	T	N	T	D	R	I	M	N	Q	T	F	W	I	G	I	Y	P	G
Template Known Secondary structure						G	G	G	S	S		.	.	.	.	.	.	.	.	.	.	.	.											T	T	B			B			T	T	S	S	G	G	G	S	G	G	G	T	T							S																		S	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.													.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	H	D	H	L	D	Y	V	V	S	K	F	E	E	F	F	G
Template Known Secondary structure																		T	T
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions