Job Description P23893 Confidence 99.82% Date Thu Jan 5 11:40:26 GMT 2012 Rank 202 Aligned Residues 290 % Identity 17% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G
Query Conservation
Alig confidence																								.																							.	.																										.	.	.	.	.	.	.	.
Template Conservation																								.																							.	.																										.	.	.	.	.	.	.	.
Template Sequence		H	I	Y	S	R	L	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	.	G	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	.	.	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	B	T	T	T																	.	T		S						S	S										T	T	T	.	.			T	T							S	S														.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																							.	.																										.	.	.	.	.	.	.	.
Template SS confidence
		1551	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.		.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.			.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																								.	.	.																					.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																								.	.	.																					.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	P	R	F	G	I	E	V	D	L	I	D	T	S	D	V	E	K	V	K	A	A	W	K	.	.	.	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	.	.	.	.	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T
Template Known Secondary structure		.	.	.	.	.	.	.	.			T	T								T	T	S										.	.	.	T	T								S	S		T	T	T						.	.	.	.												T								T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																								.	.	.																					.	.	.	.
Template SS confidence
										1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.				.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.					.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		G	F	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	.	.	G	G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G
Query Conservation																													.	.
Alig confidence										.	.	.																	.	.														.	.																																.	.	.	.	.
Template Conservation										.	.	.																																.	.																																.	.	.	.	.
Template Sequence		S	P	C	F	L	K	P	L	.	.	.	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	.	.	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	.	.	.	.	.
Template Known Secondary structure			T	T	T			G	G	.	.	.	G	G	T		S						T	T	T	T	T	T		S	S	S									S	S		.	.																														T	T	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																																.	.																																.	.	.	.	.
Template SS confidence
		1685	.	.	.	.	1690	.	.				.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.			.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	F	E	A	A	K	K
Template Known Secondary structure		.																					T		T	T							T	T	S	T	T	S	T	T									S	S			S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure		.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			1755	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.															.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.																												.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																																																							.	.
Template Sequence		L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G	I	.	.	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E
Template Known Secondary structure				T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T			T	T								S	.	.	S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.			.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions