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Job DescriptionP23893
Confidence100.00%DateThu Jan 5 11:40:26 GMT 2012
Rank38Aligned Residues367
% Identity19%Templatec3a2bA_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30..... ....40.........50.........60..... ....70.........80
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Query Sequence  SENLYSAARELIPGGVNSPVRAFTGVGGTPLF. . IEKADGAYLYDVDGKAYIDYVGSWGPMVLG. HNHPAIRNAVIEAAE
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Template Sequence  KGKLGEKISQFK. . . . . . IVEELKAKGLYAYFRPIQSKQDTEV. KIDGRRVLMFGS. . . NSYLGLTTDTRIIKAAQDALE
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   3......10.... .....20.........30......... 40.........50. ........60.........70..
 
   81.... ....90.........100.........110.........120.........130.........140.........150...
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Query Sequence  RGLSF. . . . . . . GAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKA
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Template Sequence  KYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK. EAAILFSTGFQSNLGPLS. . . CLMGRNDYILLDERDHASIIDGSRLS
Template Known Secondary structure 
S


SBTTTT


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   73......80.........90.........100.... .....110.........120.. .......130.........140........
 
   154.....160.........170.........180.........190...... ...200.........210.........220.........230..
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Query Sequence  GSGALTLGQPNSPGVPADFAKYTLTCTYNDLASVRAAFEQYPQ. EIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGA
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Template Sequence  FSK. . . . . . . . . . . . . . . . . . . VIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN. . . . LPELTSIANEFDA
Template Known Secondary structure  SS...................
TT
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SB
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   149150. ........160.........170.........180.........190.. .......200.....
 
   233......240......... 250.........260.........270.........280.........290.........300........
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Query Sequence  LLIIDEVMTGFRVALAG. . . . AQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAG
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Template Sequence  AVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTL
Template Known Secondary structure 
TTTTTTSSGGG

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SSSSTT
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   206...210.........220.........230.........240.........250.........260.........270.........280.....
 
   309310.........320.........330.........340.........350.........360.........370.........380........
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Query Sequence  FACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLD
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Template Sequence  KALEIIQNEPEHIEKLWKNTDYAKAQLLDHG. . . . . . . . . . . . . . . . . . . FDLGATESPILPIFIRSNEKTFWVTKMLQD
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TTT...................

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   286...290.........300.........310...... ...320.........330.........340......
 
   389390....... ..400.........410.........420......
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Query Sequence  EGVYLAPSA. . . . . . . . . FEAGFMSVAHSMEDINNTIDAARRVFAKL
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Template Sequence  DGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA
Template Known Secondary structure  TT

TTTS
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TT


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   347..350.........360.........370.........380.........390...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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