Job Description P23893 Confidence 99.86% Date Thu Jan 5 11:40:26 GMT 2012 Rank 182 Aligned Residues 351 % Identity 16% Template c2zy3A_ PDB info PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase Resolution 2.50 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.																								.	.	.	.	.	.
Query SS confidence																									.	.	.																								.	.	.	.	.	.
Query Sequence		W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	.	.	.	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	.	.	.	.	.	.	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A	I	R	L	A	R	G	F
Query Conservation																									.	.	.																								.	.	.	.	.	.
Alig confidence																									.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	R	D	Q	L	G	L	D	P	A	A	F	L	H	E	M	V	D	G	I	L	G	C	N	Y	P	V	P	P	R	M	L	N	I	S	E	K	I	V	R	Q	Y	I	I	R	E	M	G	A	D	A	I	P	S	E	S	V	N	L	F	A	V	E	G	G	T	A	A	M	A	Y	I	F	E	S	L	K	L	N
Template Known Secondary structure						T	S																	T		S			S	S	T	T																	T	T		T	T	S		G	G	G							S																T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure		.	.	.																					.
Query SS confidence		.	.	.																					.
Query Sequence		.	.	.	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	.	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I	V	E	P
Query Conservation		.	.	.																					.
Alig confidence		.	.	.																					.																						.	.	.	.	.	.	.	.	.	.	.	.											.	.	.									.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.											.	.	.									.
Template Sequence		G	L	L	K	A	G	D	K	V	A	I	G	M	P	V	F	T	P	Y	I	E	I	P	E	L	A	Q	Y	A	L	E	E	V	A	I	N	A	D	P	S	L	N	W	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	P	D	S	E	L	D	K	L	K	D	.	.	.	P	A	I	K	I	F	F	C	.	V
Template Known Secondary structure		T	S	S		T	T								S			T					S	T	T	S	T	T	T										B	G	G	G	T	S	B		.	.	.	.	.	.	.	.	.	.	.	.						G	G	G	G		.	.	.	T	T							.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.											.	.	.									.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.													.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.		.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.														.																										.												.	.
Query SS confidence																											.	.														.																										.												.	.
Query Sequence		V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	.	.	G	A	L	L	I	I	D	E	V	M	T	G	F	.	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	.	G	G	M	P	V	G	A	F	G	G	R	.	.
Query Conservation																											.	.														.																										.												.	.
Alig confidence																											.	.														.																										.												.	.
Template Conservation
Template Sequence		N	P	S	N	P	P	S	V	K	M	D	Q	R	S	L	E	R	V	R	N	I	V	A	E	H	R	P	D	L	M	I	L	T	D	D	V	Y	G	T	F	A	D	D	F	Q	S	L	F	A	I	C	P	E	N	T	L	L	V	Y	S	F	S	K	Y	F	G	A	T	G	W	R	L	G	V	V	A	A	H	Q	Q
Template Known Secondary structure		S	S		S	S	S		B																	T		T	T								T	T	G	G	G	S	S	S									G	G	G							S	T	T	T	T	T		G	G	G									S	S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
																																					280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	F	D	L	A	L	D	K	L	Q	E	S	E	K	V	A	L	D	H	R	Y	R	S	L	L	P	D	V	R	S	L	K	F	I	D	R	L	V	A	D	S	R	A	V	A	L	N	H	T	A	G	L	S	T	P	Q	Q	V	Q	M	A	L	F	S	L	F	A	L	M	D	E	A	D	E	Y	K	H	T	L
Template Known Secondary structure										S	S												T	T	T	T		S		G	G	G											T	T	T	T	T	T	G	G	G		S	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.				360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.																																						.	.	.	.	.
Query SS confidence																																					.	.	.																																						.	.	.	.	.
Query Sequence		D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	N	H	V	G	G	M	F	G	I	F	F	.	.	.	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	.	.	.	.	.
Query Conservation																																					.	.	.																																						.	.	.	.	.
Alig confidence																												.									.	.	.																																						.	.	.	.	.
Template Conservation																												.
Template Sequence		K	Q	L	I	R	R	R	E	T	T	L	Y	R	E	L	G	M	P	P	L	R	D	E	N	A	V	.	D	Y	Y	T	L	I	D	L	Q	D	V	T	A	K	L	Y	G	E	A	F	S	E	W	A	V	K	Q	S	S	T	G	D	M	L	F	R	I	A	D	E	T	G	I	V	L	L	P	G	R	G	F	G	S
Template Known Secondary structure													T	T	T	T	T	S						T	T	B		.		S																																								S								S	S		T
Template Predicted Secondary structure																												.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		397	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		A	F	E	A	G	F	M	S	V	A	.	H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F	A	K	L
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		N	R	P	S	G	R	A	S	L	A	N	L	N	E	Y	E	Y	A	A	I	G	R	A	L	R	K	M	A	D	E	L
Template Known Secondary structure		T	S							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions