Job Description P23893 Confidence 99.96% Date Thu Jan 5 11:40:26 GMT 2012 Rank 61 Aligned Residues 344 % Identity 17% Template c2zc0C_ PDB info PDB header:transferase Chain: C: PDB Molecule:alanine glyoxylate transaminase; PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase Resolution 2.30 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.																									.	.	.	.	.	.	.
Query SS confidence																																		.	.	.																									.	.	.	.	.	.	.
Query Sequence		D	G	K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	.	.	.	E	R	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	.	.	.	.	.	.	.	P	T	M	D	M	V	R	M	V	N	S	G	T	E
Query Conservation																																		.	.	.																									.	.	.	.	.	.	.
Alig confidence													.	.																				.	.	.																									.	.	.	.	.	.	.
Template Conservation													.	.
Template Sequence		K	G	V	K	L	I	S	L	A	A	G	.	.	D	P	D	P	E	L	I	P	R	A	V	L	G	E	I	A	K	E	V	L	E	K	E	P	K	S	V	M	Y	T	P	A	N	G	I	P	E	L	R	E	E	L	A	A	F	L	K	K	Y	D	H	L	E	V	S	P	E	N	I	V	I	T	I	G	G	T	G
Template Known Secondary structure		S	S						S				.	.				T	T	T	S																	G	G	G	G	S				T	T																	S						G	G	G
Template Predicted Secondary structure													.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E
Query Conservation
Alig confidence												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	D	L	L	G	R	V	L	I	.	.	D	P	G	D	V	V	I	T	E	N	P	S	Y	I	N	T	L	L	A	F	E	Q	L	G	A	K	I	E	G	V	P	V	D	N	D	G	M	R	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	E	E	K	I	K	E	L	K	A	K	G	Q	K
Template Known Secondary structure												.	.		T	T								S											T	T	T										T	T						.	.	.	.	.	.	.	.	.	.	.	.	.												T	T
Template Predicted Secondary structure												.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.														160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	.	.	.	.	.	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P
Query Conservation																																																				.	.	.	.	.
Alig confidence																																																				.	.	.	.	.
Template Conservation
Template Sequence		V	K	L	I	Y	T	I	P	T	G	Q	N	P	M	G	V	T	M	S	M	E	R	R	K	A	L	L	E	I	A	S	K	Y	D	L	L	I	I	E	D	T	A	Y	N	F	M	R	Y	E	G	G	D	I	V	P	L	K	A	L	D	N	E	G	R	V	I	V	A	G	T	L	S	K	V	L	G	T	G	F	R
Template Known Secondary structure										S	S		T	T	T																				T								T	T	T	T		B	S	S		S	S				G	G	G	G		S	S									S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.
Predicted Secondary structure																																															.																										.	.
Query SS confidence																																															.																										.	.
Query Sequence		V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	.	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	.	.	G	I	P	L	V	V	N
Query Conservation																																															.																										.	.
Alig confidence																		.	.	.																											.																										.	.
Template Conservation																		.	.	.
Template Sequence		I	G	W	I	I	A	E	G	E	I	L	K	K	V	L	M	.	.	.	Q	K	Q	P	I	D	F	C	A	P	A	I	S	Q	Y	I	A	L	E	Y	L	K	R	G	Y	F	E	K	Y	H	L	E	G	A	L	L	G	Y	K	E	K	R	D	I	M	L	K	A	L	E	N	H	L	P	N	A	E	F	T	K	P
Template Known Secondary structure																		.	.	.			T	T	T	T	S	S	S														T	T						T	T	T	T																					S	S	S
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.									.	.	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.								.	.	.	.	.	.	.	.										.
Query SS confidence																																										.								.	.	.	.	.	.	.	.										.
Query Sequence		H	V	G	G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	.	G	V	Y	L	A	P	S	.	.	.	.	.	.	.	.	A	F	E	A	G	F	M	S	V	.	A	H	S	M	E	D	I	N	N	T	I	D	A	A
Query Conservation																																										.								.	.	.	.	.	.	.	.										.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.								.	.	.	.	.	.	.	.										.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	G	M	F	V	M	F	F	L	P	E	G	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	S	F	A	N	E	L	M	E	R	E	G	V	V	V	V	P	G	K	P	F	Y	T	D	E	S	G	K	N	A	I	R	L	N	F	S	R	P	S	K	E	E	I	P	I	G	I	K	K	L
Template Known Secondary structure		S	B	S	S							S	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T					B			G	G	G		S	S	S			T	T							S	S	S		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.															.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	V	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	L	Y	K	E
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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