Job Description P23893 Confidence 99.96% Date Thu Jan 5 11:40:26 GMT 2012 Rank 62 Aligned Residues 340 % Identity 14% Template c2x5dD_ PDB info PDB header:transferase Chain: D: PDB Molecule:probable aminotransferase; PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa Resolution 2.25 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.									.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.														.	.	.	.	.	.	.	.
Query SS confidence																																													.														.	.	.	.	.	.	.	.
Query Sequence		G	K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	E	M	.	E	V	K	M	A	Q	L	V	T	E	L	V	P	.	.	.	.	.	.	.	.	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T
Query Conservation																																													.														.	.	.	.	.	.	.	.
Alig confidence												.	.							.																									.														.	.	.	.	.	.	.	.
Template Conservation												.	.							.
Template Sequence		G	E	D	I	I	D	L	S	M	G	.	.	N	P	D	G	P	T	.	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	E	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	H	W	Y	R	D	R	Y	D	V	Q	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L
Template Known Secondary structure		T							S			.	.				S			.														S	T	T			S				T	T																							T	T	T	S					S	S
Template Predicted Secondary structure												.	.							.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A
Query Conservation
Alig confidence										.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	H	L	M	L	A	T	L	.	.	D	H	G	D	T	I	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	V	R	S	V	P	L	V	P	G	I	D	F	F	N	E	L	E	R	A	I	R	E	S	I	P	K	P	R
Template Known Secondary structure										.	.		T	T								S			T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	T	T	S												T	S	S	S			S
Template Predicted Secondary structure										.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.							250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.																				.
Query SS confidence																																																				.	.	.	.	.	.																				.
Query Sequence		C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	G	.	.	.	.	.	.	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	.	G	G	M	P
Query Conservation																																																				.	.	.	.	.	.																				.
Alig confidence								.																																												.	.	.	.	.	.																				.
Template Conservation								.
Template Sequence		M	M	I	L	G	F	.	P	S	N	P	T	A	Q	C	V	E	L	D	F	F	E	R	V	V	A	L	A	K	Q	Y	D	V	M	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	K	D	I	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R
Template Known Secondary structure							S	.	S		T	T	T																				T								T	T	T	T		B		T	T						G	G	G	S	T	T	G	G	G	T							S	T	T	T	T	T			S
Template Predicted Secondary structure								.
Template SS confidence
		174	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	N	H	V	G
Query Conservation
Alig confidence																				.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		I	G	F	M	V	G	N	P	E	L	V	S	A	L	A	R	I	K	.	.	.	.	.	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	R	Q	Y	Q	Q	R	R	D	V	L	V	K	G	L	R	E	A	G	W	M	V	E	N	P	K	A	S
Template Known Secondary structure																				.	.	.	.	.		T	T		S	S	S													S	S																										T	T							S	B	S
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.							.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.
Query Sequence		G	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	.	.	.	.	.	.	A	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F	A	K
Query Conservation																																														.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.
Template Sequence		M	Y	V	W	A	K	I	P	E	.	.	.	.	.	.	.	.	.	.	P	Y	A	H	L	G	S	L	E	F	A	K	K	L	L	Q	D	A	K	V	S	V	S	P	G	I	G	F	G	D	Y	G	D	D	H	V	R	F	A	L	I	E	N	R	D	R	L	R	Q	A	V	R	G	I	K	A	M	F	R	A
Template Known Secondary structure		S									.	.	.	.	.	.	.	.	.	.				T	T																				G	G	G	G		G	G	G	T	T								S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.											.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions